Cited by 182DNA and Nucleic Acid ChemistryMolecular Biology Techniques and ApplicationsTardigrade Biology and Ecology

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Chain and conformation stability of solid-state DNA: implications for room temperature storage

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Bonnet, Jacques, Colotte, Marthe, Coudy, Delphine, Couallier, Vincent, Portier, Joseph, Morin, Bénédicte, Tuffet, Sophie·2010·Nucleic Acids Research

DOI 10.1093/nar/gkp1060PMC PMC2836546

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Abstract

There is currently wide interest in room temperature storage of dehydrated DNA. However, there is insufficient knowledge about its chemical and structural stability. Here, we show that solid-state DNA degradation is greatly affected by atmospheric water and oxygen at room temperature. In these conditions DNA can even be lost by aggregation. These are major concerns since laboratory plastic ware is not airtight. Chain-breaking rates measured between 70 degrees C and 140 degrees C seemed to follow Arrhenius' law. Extrapolation to 25 degrees C gave a degradation rate of about 1-40 cuts/10(5) nucleotides/century. However, these figures are to be taken as very tentative since they depend on the validity of the extrapolation and the positive or negative effect of contaminants, buffers or additives. Regarding the secondary structure, denaturation experiments showed that DNA secondary structure could be preserved or fully restored upon rehydration, except possibly for small fragments. Indeed, below about 500 bp, DNA fragments underwent a very slow evolution (almost suppressed in the presence of trehalose) which could end in an irreversible denaturation. Thus, this work validates using room temperature for storage of DNA if completely protected from water and oxygen.

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Authors: Bonnet, J., Colotte, M., Coudy, D., Couallier, V., Portier, J., Morin, B., & Tuffet, S.
Affiliations: Université de Bordeaux (FR)
Corresponding author: Bonnet, Jacques
ORCID: Bonnet, Jacques
Colotte, Marthe
Morin, Bénédicte
Venue: Nucleic Acids Research
Publisher: Oxford University Press (OUP)
Published: 2009-12-07
Volume: 38
Issue: 5
Pages: 1531-1546
ISSN: 0305-1048 (ISSN-L)
1362-4962
DOI: 10.1093/nar/gkp1060
PMC: PMC2836546
OpenAlex: W2107762567
Cited by: 182
References: 89
Citations by year: 2026: 18 · 2025: 15 · 2024: 12 · 2023: 20 · 2022: 10 · 2021: 15 · 2020: 16 · 2019: 12 · 2018: 8 · 2017: 10 · 2016: 5 · 2015: 5 · 2014: 8 · 2013: 14 · 2012: 4
FWCI: 1.74
Type: journal article
Language: en
Open access: gold
doi.org
Licence: cc-by-nc
creativecommons.org/licenses/by-nc/2.0/uk/ (vor, 2711 d)
Locations: Nucleic Acids Research (publishedVersion, cc-by-nc)
PubMed Central (publishedVersion, cc-by-nc)
PubMed (publishedVersion)
HAL (submittedVersion, other-oa)
Oskar-Bordeaux (Universite de Bordeaux) (submittedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Molecular Biology Techniques and Applications
Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Tardigrade Biology and Ecology
Keywords: DNA degradation, room temperature storage, Arrhenius extrapolation, secondary structure stability, DNA denaturation, rehydration, trehalose, DNA aggregation
MeSH terms: 8-Hydroxy-2'-Deoxyguanosine, Deoxyguanosine, DNA, Hot Temperature, Humidity, Kinetics, Nucleic Acid Conformation, Preservation, Biological, Temperature, Water

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Chain and conformation stability of solid-state DNA: implications for room temperature storage

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