Cited by 68MicroRNA in disease regulationCell Adhesion Molecules ResearchDevelopmental Biology and Gene Regulation

MicroRNA-338-3p and microRNA-451 contribute to the formation of basolateral polarity in epithelial cells

Open access
Tsuchiya, Soken, Oku, Masahito, Imanaka, Yukako, Kunimoto, Ryo, Okuno, Yasushi, Terasawa, Kazuya, Sato, Fumiaki, Tsujimoto, Gozoh +1 more·2009·Nucleic Acids Research

Abstract

MicroRNAs are small noncoding RNA species, some of which are playing important roles in cell differentiation. However, the level of participations of microRNAs in epithelial cell differentiation is largely unknown. Here, utilizing an epithelial differentiation model with T84 cells, we demonstrate that miR-338-3p and miR-451 contribute to the formation of epithelial basolateral polarity by facilitating translocalization of beta1 integrin to the basolateral membrane. Among 250 microRNAs screened in this study, the expression levels of four microRNAs (miR-33a, 210, 338-3p and 451) were significantly elevated in the differentiated stage of T84 cells, when epithelial cell polarity was established. To investigate the involvement of these microRNAs in terms of epithelial cell polarity, we executed loss-of- and gain-of-function analyses of these microRNAs. The blockade of endogenous miR-338-3p or miR-451 via each microRNA-specific antisense oligonucleotides inhibited the translocalization of beta1 integrin to the basolateral membrane, whereas inhibition of miR-210 or miR-33a had no effect on it. On the other hand, simultaneous transfection of synthetic miR-338-3p and miR-451 accelerated the translocalization of beta1 integrin to the basolateral membrane, although the introduction of individual synthetic microRNAs exhibited no effect. Therefore, we concluded that both miR-338-3p and miR-451 are necessary for the development of epithelial cell polarity.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/nar/gkp255

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Cellular miR-33 levels are dependent on culture conditions and exogenous lipid supply.

    “It has been previously noted that cellular miR-33 levels are dependent on culture conditions and exogenous lipid supply (36).”

    From Expression of miR-33 from an SREBP2 Intron Inhibits Cholesterol Export and Fatty Acid Oxidation* (2010) · cites this paper as [36]

    The Results (Screening of miRNAs related with differentiation; page unavailable) report that miR-33a increased in T84 cells between culture days 0 and 7, supporting a limited link between its level and culture conditions. The paper does not report that exogenous lipid supply affects miR-33 levels; its cell-culture methods describe serum-containing medium, not a lipid-supply comparison. (LLM, conf=0.87)

    Experimental — accuracy not yet measured
  • miR-338-3p regulates morphological polarity in other cell types by facilitating the activity of β-integrin.

    “Others have shown miR-338-3p regulates morphological polarity in other cell types by facilitating the activity of β-integrin [26].”

    From MiR-338-3p regulates neuronal maturation and suppresses glioblastoma proliferation. (2017) · cites this paper as [26]

    The Results section (Roles of miRNAs in basolateral polarity; page unavailable) shows that miR-338-3p contributes to basolateral polarity in T84 epithelial cells by promoting β1-integrin localization to the basolateral membrane. It does not show increased β-integrin activity, and the effect required miR-451 as well; miR-338-3p alone was insufficient. (LLM, conf=0.88)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 29

  1. [1]Deborde S Perret E Gravotta D Deora A Salvarezza S Schreiner R Rodriguez-Boulan E Clathrin is a key regulator of basolateral polarity Nature 2008 452 719 723 18401403 PMC4078870
  2. [2]Bruewer M Luegering A Kucharzik T Parkos CA Madara JL Hopkins AM Nusrat A Proinflammatory cytokines disrupt epithelial barrier function by apoptosis-independent mechanisms J. Immunol. 2003 171 6164 6172 14634132
  3. [3]Ojakian GK Schwimmer R Regulation of epithelial cell surface polarity reversal by beta 1 integrins J. Cell Sci. 1994 107 Pt 3 561 576 7516342
  4. [4]Utech M Ivanov AI Samarin SN Bruewer M Turner JR Mrsny RJ Parkos CA Nusrat A Mechanism of IFN-gamma-induced endocytosis of tight junction proteins: myosin II-dependent vacuolarization of the apical plasma membrane Mol. Biol. Cell 2005 16 5040 5052 16055505 PMC1237102
  5. [5]Borg JP Marchetto S Le Bivic A Ollendorff V Jaulin-Bastard F Saito H Fournier E Adelaide J Margolis B Birnbaum D ERBIN: a basolateral PDZ protein that interacts with the mammalian ERBB2/HER2 receptor Nat. Cell Biol. 2000 2 407 414 10878805
  6. [6]van Meer G Simons K Lipid polarity and sorting in epithelial cells J. Cell Biochem. 1988 36 51 58 3277985
  7. [7]Suzuki A Ishiyama C Hashiba K Shimizu M Ebnet K Ohno S aPKC kinase activity is required for the asymmetric differentiation of the premature junctional complex during epithelial cell polarization J. Cell Sci. 2002 115 3565 3573 12186943
  8. [8]Assemat E Bazellieres E Pallesi-Pocachard E Le Bivic A Massey-Harroche D Polarity complex proteins Biochim. Biophys. Acta. 2008 1778 614 630 18005931
  9. [9]Rodriguez-Boulan E Kreitzer G Musch A Organization of vesicular trafficking in epithelia Nat. Rev. Mol. Cell Biol. 2005 6 233 247 15738988
  10. [10]Folsch H Ohno H Bonifacino JS Mellman I A novel clathrin adaptor complex mediates basolateral targeting in polarized epithelial cells Cell 1999 99 189 198 10535737
  11. [11]Merlin D Sitaraman S Liu X Eastburn K Sun J Kucharzik T Lewis B Madara JL CD98-mediated links between amino acid transport and beta 1 integrin distribution in polarized columnar epithelia J. Biol. Chem. 2001 276 39282 39289 11507094
  12. [12]Hino K Tsuchiya K Fukao T Kiga K Okamoto R Kanai T Watanabe M Inducible expression of microRNA-194 is regulated by HNF-1alpha during intestinal epithelial cell differentiation RNA 2008 14 1433 1442 18492795 PMC2441992
  13. [13]Bartel DP MicroRNAs: genomics, biogenesis, mechanism, and function Cell 2004 116 281 297 14744438
  14. [14]Tsuchiya S Okuno Y Tsujimoto G MicroRNA: biogenetic and functional mechanisms and involvements in cell differentiation and cancer J. Pharmacol. Sci. 2006 101 267 270 16921236
  15. [15]Griffiths-Jones S Grocock RJ van Dongen S Bateman A Enright AJ miRBase: microRNA sequences, targets and gene nomenclature Nucleic Acids Res. 2006 34 D140 D144 16381832 PMC1347474
  16. [16]Lewis BP Burge CB Bartel DP Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 2005 120 15 20 15652477
  17. [18]Chomczynski P Sacchi N Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal. Biochem. 1987 162 156 159 2440339
  18. [19]Chen C Ridzon DA Broomer AJ Zhou Z Lee DH Nguyen JT Barbisin M Xu NL Mahuvakar VR Andersen MR Real-time quantification of microRNAs by stem-loop RT-PCR Nucleic Acids Res. 2005 33 e179 16314309 PMC1292995
  19. [20]Ruike Y Ichimura A Tsuchiya S Shimizu K Kunimoto R Okuno Y Tsujimoto G Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines J. Hum. Genet. 2008 53 515 523 18465083
  20. [21]Irizarry RA Bolstad BM Collin F Cope LM Hobbs B Speed TP Summaries of Affymetrix GeneChip probe level data Nucleic Acids Res. 2003 31 e15 12582260 PMC150247
  21. [22]Kaoutzani P Parkos CA Delp-Archer C Madara JL Isolation of plasma membrane fractions from the intestinal epithelial model T84 Am. J. Physiol. 1993 264 C1327 C1335 8388636
  22. [23]Gu N Adachi T Takeda J Aoki N Tsujimoto G Ishihara A Tsuda K Yasuda K Sucrase-isomaltase gene expression is inhibited by mutant hepatocyte nuclear factor (HNF)-1alpha and mutant HNF-1beta in Caco-2 cells J. Nutr. Sci. Vitaminol. (Tokyo) 2006 52 105 112 16802690
  23. [24]Ducharme NA Hales CM Lapierre LA Ham AJ Oztan A Apodaca G Goldenring JR MARK2/EMK1/Par-1Balpha phosphorylation of Rab11-family interacting protein 2 is necessary for the timely establishment of polarity in Madin-Darby canine kidney cells Mol. Biol. Cell 2006 17 3625 3637 16775013 PMC1525241
  24. [26]Baek D Villen J Shin C Camargo FD Gygi SP Bartel DP The impact of microRNAs on protein output Nature 2008 455 64 71 18668037 PMC2745094
  25. [27]Dow LE Elsum IA King CL Kinross KM Richardson HE Humbert PO Loss of human Scribble cooperates with H-Ras to promote cell invasion through deregulation of MAPK signalling Oncogene 2008 27 5988 6001 18641685
  26. [28]Joshi J Fernandez-Marcos PJ Galvez A Amanchy R Linares JF Duran A Pathrose P Leitges M Canamero M Collado M Par-4 inhibits Akt and suppresses Ras-induced lung tumorigenesis EMBO J. 2008 27 2181 2193 18650932 PMC2519103
  27. [29]Karp CM Tan TT Mathew R Nelson D Mukherjee C Degenhardt K Karantza-Wadsworth V White E Role of the polarity determinant crumbs in suppressing mammalian epithelial tumor progression Cancer Res. 2008 68 4105 4115 18519669 PMC2696887
  28. [30]Gal H Pandi G Kanner AA Ram Z Lithwick-Yanai G Amariglio N Rechavi G Givol D MIR-451 and Imatinib mesylate inhibit tumor growth of Glioblastoma stem cells Biochem. Biophys. Res. Commun. 2008 376 86 90 18765229
  29. [31]Kovalchuk O Filkowski J Meservy J Ilnytskyy Y Tryndyak VP Chekhun VF Pogribny IP Involvement of microRNA-451 in resistance of the MCF-7 breast cancer cells to chemotherapeutic drug doxorubicin Mol. Cancer Ther. 2008 7 2152 2159 18645025

Cited by

Sorted by citations

Authors
Tsuchiya, S., Oku, M., Imanaka, Y., Kunimoto, R., Okuno, Y., Terasawa, K., Sato, F., Tsujimoto, G., & Shimizu, K.
Affiliations
Kyoto University (JP)
Corresponding author
Shimizu, Kazuharu
Venue
Nucleic Acids Research
Published
2009-04-22
Volume
37
Issue
11
Pages
3821-3827
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2082496751
Cited by
68
References
2
Citations by year
2025: 1 · 2023: 1 · 2021: 7 · 2020: 5 · 2019: 5 · 2018: 8 · 2017: 1 · 2016: 2 · 2015: 5 · 2014: 1 · 2013: 7 · 2012: 7
FWCI
2.80
Type
journal article
Language
en
Open access
Locations
  • Nucleic Acids Research (publishedVersion, cc-by-nc)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
Funders
  • Johns Hopkins University
  • National Institute of Biomedical Innovation
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
  • Health Sciences › Medicine › Immunology and Allergy › Cell Adhesion Molecules Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
Keywords
microRNA-451, epithelial polarity, beta1 integrin, epithelial differentiation, T84 cells, miR-33a, miR-210
MeSH terms
Cell Differentiation, Epithelial Cells, Gene Expression Regulation, Humans, Cell Polarity, MicroRNAs, Cell Line, Tumor

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review