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SITEHOUND-web: a server for ligand binding site identification in protein structures
Open accessAbstract
SITEHOUND-web (http://sitehound.sanchezlab.org) is a binding-site identification server powered by the SITEHOUND program. Given a protein structure in PDB format SITEHOUND-web will identify regions of the protein characterized by favorable interactions with a probe molecule. These regions correspond to putative ligand binding sites. Depending on the probe used in the calculation, sites with preference for different ligands will be identified. Currently, a carbon probe for identification of binding sites for drug-like molecules, and a phosphate probe for phosphorylated ligands (ATP, phoshopeptides, etc.) have been implemented. SITEHOUND-web will display the results in HTML pages including an interactive 3D representation of the protein structure and the putative sites using the Jmol java applet. Various downloadable data files are also provided for offline data analysis.
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Citations
Cited by
Spatiotemporal identification of druggable binding sites using deep learning
Kozlovskii, I., & Popov, P. (2020) · Communications Biology · doi:10.1038/s42003-020-01350-0 · Cited by 89
Smith, Z., Strobel, M., Vani, B. P., & Tiwary, P. (2024) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.3c01698 · Cited by 47
Bhagavat, R., Sankar, S., Srinivasan, N., & Chandra, N. (2018) · Structure · doi:10.1016/j.str.2018.02.001 · Cited by 41
Metadata
- Authors
- Hernandez, M., Ghersi, D., & Sanchez, R.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-04-26
- Volume
- 37
- Issue
- Web Server
- Pages
- W413-W416
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2090794687
- Cited by
- 227
- References
- 0
- FWCI
- 8.69
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: SITEHOUND-web: a server for ligand binding site identification in protein structures. https://app.cochat.ai/papers/10.1093/nar/gkp281
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- Hernandez, M., Ghersi, D., & Sanchez, R. (2009). SITEHOUND-web: a server for ligand binding site identification in protein structures. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp281
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