RosettaAntibody: antibody variable region homology modeling server
Cited by (161)
Items 101–161 of 161
- Plant-derived chimeric antibodies inhibit the invasion of human fibroblasts byToxoplasma gondiiSherene Swee Yin Lim, Kek Heng Chua, Greta Nölke, Holger Spiegel, Wai Leong Goh, Sek C. Chow, Boon Pin Kee, Rainer Fischer, Stefan Schillberg, Rofina Yasmin Othman · 2018 · PeerJ
- Artificial intelligence in drug development for delirium and Alzheimer’s diseaseRuixue Ai, Xianglu Xiao, Shenglong Deng, Nan Yang, Xiaodan Xing, Leiv Otto Watne, Geir Selbæk, Yehani Wedatilake, Chenglong Xie, David Chaim Rubinsztein et al. · 2025 · Acta Pharmaceutica Sinica B
- Putative Bioactive Motif of Tritrpticin Revealed by an Antibody with Biological Receptor-Like PropertiesRaghava Sharma, Suvendu Lomash, Dinakar M. Salunke · 2013 · PLoS ONE
- Structural basis of anthrax edema factor neutralization by a neutralizing antibodyMichelle A. Makiya, Michael A. Dolan, Liane Agulto, Robert H. Purcell, Zhaochun Chen · 2011 · Biochemical and Biophysical Research Communications
- RosettaAntibodyDesign (RAbD): A General Framework for Computational Antibody DesignJared Adolf-Bryfogle, Oleks Kalyuzhniy, Michael Kubitz, Brian D. Weitzner, Xiaozhen Hu, Yumiko Adachi, William R. Schief, Roland L. Dunbrack · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- Methods for the Homology Modeling of Antibody Variable RegionsAroop Sircar · 2011 · Methods in molecular biology
- Computer-Aided Antibody Design: An OverviewYee Siew Choong, Yie Vern Lee, Jia Xin Soong, Cheh Tat Law, Yee Ying Lim · 2017 · Advances in experimental medicine and biology
- Prediction of Antibody EpitopesMorten Nielsen, Paolo Marcatili · 2015 · Methods in molecular biology
- Exploring Experimental and In Silico Approaches for Antibody–Drug Conjugates in Oncology TherapiesVitor Martins de Almeida, Milena Botelho Pereira Soares, Osvaldo A. Santos‐Filho · 2025 · Pharmaceuticals
- 19n01, a broadly neutralizing antibody against omicron BA.1, BA.2, BA.4/5, and other SARS-CoV-2 variants of concernMelissa García‐Vega, Edgar Alonso Melgoza-González, Sofía Hernández‐Valenzuela, Diana Hinojosa‐Trujillo, Mónica Reséndiz‐Sandoval, Mara Anaís Llamas-Covarrubias, Martín Loza-López, Olivia Valenzuela, Alan Soto‐Gaxiola, Miguel Ángel Hernández‐Oñate et al. · 2023 · iScience
- Limited conformational flexibility in the paratope may be responsible for degenerate specificity of HIV epitope recognitionArijit Bhowmick, Dinakar M. Salunke · 2012 · International Immunology
- Multitarget selection of catalytic antibodies with β‐lactamase activity using phage displayMelody A. Shahsavarian, Nancy Chaaya, Narciso Costa, Didier Boquet, Alexandre P. Atkinson, Bernard Offmann, Srini V. Kaveri, Sébastien Lacroix‐Desmazes, Alain Friboulet, Bérangère Avalle et al. · 2017 · FEBS Journal
- Key aspects of the past 30 years of protein designGiulia Magi Meconi, Ivan R. Sasselli, Valentino Bianco, José N. Onuchic, Ivan Coluzza · 2022 · Reports on Progress in Physics
- ASAP-SML: An antibody sequence analysis pipeline using statistical testing and machine learningXinmeng Li, James A. Van Deventer, Soha Hassoun · 2020 · PLoS Computational Biology
- NanoNet: Rapid end-to-end nanobody modeling by deep learning at sub angstrom resolutionTomer Cohen, Matan Halfon, Dina Schneidman‐Duhovny · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Neutralizing Capacity of Monoclonal Antibodies That Recognize Peptide Sequences Underlying the Carbohydrates on gp41 of Simian Immunodeficiency VirusJosé M. Martinez-Navío, Ronald C. Desrosiers · 2012 · Journal of Virology
- A benchmark study of protein folding algorithms on nanobodiesShibo Liang, Ziquan Liang, Zecheng Wu, Feijuan Huang, Xu Wang, Zihao Tan, Rui He, Zeyi Lu, Yuanzhe Cai, Bingding Huang et al. · 2023 · International Conference on Communications, Computing and Artificial Intelligence (CCCAI)
- Role of Non-local Interactions between CDR Loops in Binding Affinity of MR78 Antibody to Marburg Virus GlycoproteinAmandeep K. Sangha, Jinhui Dong, Lauren E. Williamson, Takao Hashiguchi, Erica Ollmann Saphire, James E. Crowe, Jens Meiler · 2017 · Structure
- Human antibodies in Mexico and Brazil neutralizing tick-borne flavivirusesTomás Cervantes Rincón, Tania Kapoor, Jennifer R. Keeffe, Luca Simonelli, Hans-Heinrich Hoffmann, Marianna Agudelo, Andrea Jurado, Avery Peace, Yu Erica Lee, Anna Gazumyan et al. · 2024 · Cell Reports
- Computational Modelling for Formulation DesignTeja Kumar Ponduri, Roja Rani Budha, Deepika Paliwal, Kartheek Siripurapu, Rajasekhar Reddy Alavala, GSN Koteswara Rao · 2025 · Springer eBooks
- Functional and binding characterization of a single chain Fv antibody to abscisic acid and conjugated abscisic acidXiaojiao Chen, Yao Lu, Guiyu Tan, Zhen Cao, Wei Liu, Baomin Wang, Mingcai Zhang, Zhaohu Li · 2016 · Food and Agricultural Immunology
- Discovery of a pan anti-SARS-CoV-2 monoclonal antibody with highly efficient infected cell killing capacity for novel immunotherapeutic approachesDaouda Abba Moussa, Mario Vazquez, Christine Chable-Bessia, Vincent Roux-Portalez, Elia Tamagnini, Mattia Pedotti, Luca Simonelli, Giang Ngo, Manon Souchard, Sébastien Lyonnais et al. · 2024 · Emerging Microbes & Infections
- Computer-Assisted Modeling of Antibody Variable DomainsOscar Henrique Pereira Ramos · 2012 · Methods in molecular biology
- Antibodies: Computer-Aided Prediction of Structure and Design of FunctionAlexander M. Sevy, Jens Meiler · 2015 · ASM Press eBooks
- Molecular dynamic simulation of Trastuzumab F(ab’)2structure in corporation with HER2 as a theranostic agent of breast cancerSandra Hermanto, Muhammad Yusuf, Abdul Mutalib, Sumi Hudiyono · 2017 · Journal of Physics Conference Series
- Designing and overproducing a tandem epitope of gp350/220 that shows a potential to become an EBV vaccineNashi Widodo, Nadya Veronica Margarecaesha Anyndita, Nurul Dluha, Muhaimin Rifa’i, Karimatul Himmah, Mulya Dwi Wahyuningsih · 2018 · Heliyon
- Molecular Modeling Methods in the Development of Affine and Specific Protein-Binding AgentsShamsudin S. Nasaev, Artem R. Mukanov, Ivan V. Mishkorez, Ivan I. Kuznetsov, Iosif V. Leibin, Vladislava A. Dolgusheva, Gleb A. Pavlyuk, Artem L. Manasyan, Alexander V. Veselovsky · 2024 · Biochemistry (Moscow)
- Generation, characterization, and docking studies of DNA‐hydrolyzing recombinant Fab antibodiesHaggag S. Zein, Ahmed El‐Sehemy, Mohamed Fares, Mahmoud ElHefnawi, Jaime A. Teixeira da Silva, Kazutaka Miyatake · 2011 · Journal of Molecular Recognition
- AlphaFold and Docking Approaches for Antibody–Antigen and Other Targets: Insights From CAPRI Rounds 47–55Ragul Gowthaman, Minjae Park, Rui Ming Yin, Johnathan D. Guest, Brian G. Pierce · 2025 · Proteins Structure Function and Bioinformatics
- Alternative Methods to Animal Use for Monoclonal Antibody Generation and ProductionJane Zveiter de Moraes, Bárbara Hamaguchi, Camila Braggion, Enzo Reina Speciale, Fernanda Beatriz Viana Cesar, Gabriela de Fátima da Silva Soares, Juliana Harumi Osaki, Rodrigo Barbosa de Aguiar, Tauane Mathias Pereira · 2021 · IntechOpen eBooks
- Application of Bioinformatics Principles for Target EvaluationAnthony C. Carvalloza, Mohammad Fallahi, Sahba Tabrizifard · 2012 · Springer eBooks
- Molecular Docking at a GlanceMaryam Hamzeh‐Mivehroud, Babak Sokouti, Siavoush Dastmalchi · 2016 · Advances in medical technologies and clinical practice book series
- A single epitope of Epstein-Barr Virus stimulate IgG production in miceNashi Widodo, Bambang Pristiwanto, Muhaimin Rifa’i, Irfan Mustafa, Fahrul Huyop · 2018 · Annals of Medicine and Surgery
- Functional and in silico Characterization of Neutralizing Interactions Between Antibodies and the Foot-and-Mouth Disease Virus Immunodominant Antigenic SiteRubén Marrero Díaz de Villegas, Cristina Seki, Nora Mattion, Guido Alberto König · 2021 · Frontiers in Veterinary Science
- Bioinformatics Tools for Analysis of AntibodiesAndrew C.R. Martin, James Allen · 2014
- Antibody structure–function relationships2012 · Elsevier eBooks
- Revisiting Protein–Copolymer Binding Mechanisms: Insights beyond the “Lock-and-Key” ModelXiao Xu, Menghan Xie, Shudan Luo, Xu Jia · 2024 · The Journal of Physical Chemistry Letters
- Integrative and Emerging Models in Antibody Research: A Comprehensive ReviewJagadeeswara Reddy Devasani, Girijasankar Guntuku, Prathyusha sarabu, Murali Krishna Kumar Muthyala, Mary Sulakshana Palla, Mallikarjuna Subrahmanyam Volety · 2025 · Antibody Therapeutics
- Development of Methods to analyze and represent Small-Angle Scattering Data from Interacting and Flexible Biological MacromoleculesMikhail Kachala · 2015
- Design of peptides with high affinity binding to a monoclonal antibody as a basis for immunotherapySurendra S. Negi, Randall M. Goldblum, Werner A. Braun, Terumi Midoro‐Horiuti · 2021 · Peptides
- Bioinformatics Resources, Tools, and Strategies in Designing Therapeutic ProteinsM. Sudhan, Jency Roshni, V. Janakiraman, Mahema Sivakumar, Shiek Fareeth Ahmed · 2022 · Springer eBooks
- Human-murine chimeric autoantibodies with high affinity and specificity for systemic sclerosisSunhui Chen, Qiong Liang, Yanhang Zhuo, Qin Hong · 2023 · Frontiers in Immunology
- References2012 · Elsevier eBooks
- A deeper analysis of the epitope/paratope of PLY-5, a mouse monoclonal antibody which recognises the conserved undecapeptide tryptophan-rich loop (ECTGLAWEWWR) of bacterial cholesterol-dependent cytolysinsPedro González‐Menéndez, Marcos García-Ocaña, Juan R. de los Toyos · 2012 · Biochemical and Biophysical Research Communications
- Translating genomic sequences into antibody efficacy and safety against influenza toward clinical trial outcomes: a case studyHsih‐Te Yang, Hong Yang, Jung-Hsien Chiang, Shih-Jon Wang · 2016 · Drug Discovery Today
- Modelagem molecular das interações do complexo antígeno-anticorpo na investigação de doenças desmielinizantes autoimunesJéssica Cristiane Magalhães Ierich · 2019
- Antibody Modeling, Engineering, and DesignSharon Fischman, Yanay Ofran · 2018 · Springer eBooks
- Predictive QSAR tools to aid in early process development of monoclonal antibodiesJohn Micael Andreas Karlberg · 2019
- Molecular Docking at a GlanceMaryam Hamzeh‐Mivehroud, Babak Sokouti, Siavoush Dastmalchi · 2016 · IGI Global eBooks
- Faculty Opinions recommendation of Role of Non-local Interactions between CDR Loops in Binding Affinity of MR78 Antibody to Marburg Virus Glycoprotein.Elke Mühlberger · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Modeling of Antibody and T-Cell Receptor StructuresKamilla Kjærgaard Jensen, Anna Chailyan, Davide Cirillo, Anna Luna Tramontano, Paolo Marcatili · 2018 · Springer eBooks
- Striped-Cross Attention Network with Implicit Semantic Knowledge for Antibody Structure PredictionMiao Gu, Min Liu · 2023 · Lecture notes in electrical engineering
- Interplay of Epitope Landscapes: Unraveling Molecular Recognition through Mapping, Docking, and SimulationShine P. Varkey, Shankar K.M. · 2024 · Biomedical engineering
- Explore antibody repertoire in the era of AIYudi Zhang, Hefei Wang, Chencheng Liu, Fei‐Long Meng · 2025 · Acta Biochimica et Biophysica Sinica
- Structural basis of serine protease inhibition by antibodies from biased Fab phage-display librariesKyle James Anderson, Melody S Lee, Natalia Sevillano, Gang Chen, Michael J. Hornsby, Sachdev S. Sidhu, Charles S. Craik · 2026 · Biological Chemistry
- Decoding antigen-antibody interactions: Predicting antibody shapes using viral protein frameworksNamami Singh, Aishanya Mishra, Shruti Sendur, Vaibhav Chandrakar · 2026 · AIP conference proceedings
- Genesis of immune diversity and selection of catalytic antibodies : a new investigationMelody A. Shahsavarian · 2015 · theses.fr (ABES)
- 3D structures of camelid antibodies : in-silico analyses, prediction and their dynamicsAkhila Melarkode Vattekatte · 2019
- Anticorps catalytiques et répertoires immuns murins : analyse génétique, biochimique et bio-informatiqueNancy Chaaya · 2019 · theses.fr (ABES)
- Prediction of Protein Antigen Epitopes from Monoclonal Antibodies by In Silico Molecular DockingTânia Maria Manieri, Gabriela Massaro Barreiros · 2026 · Methods in molecular biology
- Nanobody-Based Lateral Flow Assays: Applications, Innovations, Challenges, and Future DirectionsYuli Peng, María Goméz-Castillo, Robert Hoehndorf, Fabian M. Kiessling, Dominik Renn, Magnus Rueping · 2026 · ACS Sensors