The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Conformational analysis of nucleic acids revisited: Curves+
Open accessAbstract
We describe Curves+, a new nucleic acid conformational analysis program which is applicable to a wide range of nucleic acid structures, including those with up to four strands and with either canonical or modified bases and backbones. The program is algorithmically simpler and computationally much faster than the earlier Curves approach, although it still provides both helical and backbone parameters, including a curvilinear axis and parameters relating the position of the bases to this axis. It additionally provides a full analysis of groove widths and depths. Curves+ can also be used to analyse molecular dynamics trajectories. With the help of the accompanying program Canal, it is possible to produce a variety of graphical output including parameter variations along a given structure and time series or histograms of parameter variations during dynamics.
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Cites
VMD: visual molecular dynamics
Humphrey, W., Dalke, A., & Schulten, K. (1996) · Journal of Molecular Graphics · doi:10.1016/0263-7855(96)00018-5 · Cited by 66,952
Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid
WATSON, J. D., & CRICK, F. H. C. (1953) · Nature · doi:10.1038/171737a0 · Cited by 13,584
PNA hybridizes to complementary oligonucleotides obeying the Watson–Crick hydrogen-bonding rules
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Cited by
Martini coarse-grained force field: Extension to RNA
Uusitalo, J. J., Ingólfsson, H. I., Marrink, S. J., & Faustino, I. (2017) · Biophysical Journal · doi:10.1016/j.bpj.2017.05.043 · Cited by 259
Structural basis for Cas9 off-target activity
Pacesa, M., Lin, C.-H., Cléry, A., Saha, A., Arantes, P. R., Bargsten, K., Irby, M. J., Allain, F. H.-T., Palermo, G., Cameron, P., et al. (2022) · Cell · doi:10.1016/j.cell.2022.09.026 · Cited by 198
Pogenberg, V., Ögmundsdóttir, M. H., Bergsteinsdóttir, K., Schepsky, A., Phung, B., Deineko, V., Milewski, M., Steingrímsson, E., & Wilmanns, M. (2012) · Genes & Development · doi:10.1101/gad.198192.112 · Cited by 137
Rychlik, M. P., Chon, H., Cerritelli, S. M., Klimek, P., Crouch, R. J., & Nowotny, M. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.11.001 · Cited by 109
Zhang (2017) · doi:10.3390/molecules23020228 · Cited by 93
Metadata
- Authors
- Lavery, R., Moakher, M., Maddocks, J. H., Petkeviciute, D., & Zakrzewska, K.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-07-22
- Volume
- 37
- Issue
- 17
- Pages
- 5917-5929
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2032183039
- Cited by
- 762
- References
- 3
- FWCI
- 10.32
- Type
- journal article
- Language
- en
- Open access
- gold
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- Lavery, R., Moakher, M., Maddocks, J. H., Petkeviciute, D., & Zakrzewska, K. (2009). Conformational analysis of nucleic acids revisited: Curves+. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp608
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