The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis
Open accessAbstract
The subcellular location database for Arabidopsis proteins (SUBA3, http://suba.plantenergy.uwa.edu.au) combines manual literature curation of large-scale subcellular proteomics, fluorescent protein visualization and protein-protein interaction (PPI) datasets with subcellular targeting calls from 22 prediction programs. More than 14 500 new experimental locations have been added since its first release in 2007. Overall, nearly 650 000 new calls of subcellular location for 35 388 non-redundant Arabidopsis proteins are included (almost six times the information in the previous SUBA version). A re-designed interface makes the SUBA3 site more intuitive and easier to use than earlier versions and provides powerful options to search for PPIs within the context of cell compartmentation. SUBA3 also includes detailed localization information for reference organelle datasets and incorporates green fluorescent protein (GFP) images for many proteins. To determine as objectively as possible where a particular protein is located, we have developed SUBAcon, a Bayesian approach that incorporates experimental localization and targeting prediction data to best estimate a protein's location in the cell. The probabilities of subcellular location for each protein are provided and displayed as a pictographic heat map of a plant cell in SUBA3.
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Cites
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Cited by
COMPARTMENTS: unification and visualization of protein subcellular localization evidence
Binder, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., Schneider, R., & Jensen, L. J. (2014) · Database · doi:10.1093/database/bau012 · Cited by 668
SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations
Hooper, C. M., Castleden, I. R., Tanz, S. K., Aryamanesh, N., & Millar, A. H. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw1041 · Cited by 445
Self-citationMora-Macías, J., Ojeda-Rivera, J. O., Gutiérrez-Alanís, D., Yong-Villalobos, L., Oropeza-Aburto, A., Raya-González, J., Jiménez-Domínguez, G., Chávez-Calvillo, G., Rellán-Álvarez, R., & Herrera-Estrella, L. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1701952114 · Cited by 303
Broeckx, T., Hulsmans, S., & Rolland, F. (2016) · Journal of Experimental Botany · doi:10.1093/jxb/erw416 · Cited by 267
Nitrogen-use efficiency in maize (Zea mays L.): from ‘omics’ studies to metabolic modelling
Simons, M., Saha, R., Guillard, L., Clement, G., Armengaud, P., Canas, R., Maranas, C. D., Lea, P. J., & Hirel, B. (2014) · Journal of Experimental Botany · doi:10.1093/jxb/eru227 · Cited by 87
Metadata
- Authors
- Tanz, S. K., Castleden, I., Hooper, C. M., Vacher, M., Small, I., & Millar, H. A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-11-23
- Volume
- 41
- Issue
- D1
- Pages
- D1185-D1191
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2052841916
- Cited by
- 276
- References
- 1
- FWCI
- 13.36
- Type
- journal article
- Language
- en
- Open access
- gold
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- Tanz, S. K., Castleden, I., Hooper, C. M., Vacher, M., Small, I., & Millar, H. A. (2012). SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Research. https://doi.org/10.1093/nar/gks1151
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