The DOI matches its Crossref record; 39 of the 39 references it cites were found in a registry or an index.
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
Open accessAbstract
With the aim to provide a resource for functional and evolutionary study of plant transcription factors (TFs), we updated the plant TF database PlantTFDB to version 3.0 (http://planttfdb.cbi.pku.edu.cn). After refining the TF classification pipeline, we systematically identified 129 288 TFs from 83 species, of which 67 species have genome sequences, covering main lineages of green plants. Besides the abundant annotation provided in the previous version, we generated more annotations for identified TFs, including expression, regulation, interaction, conserved elements, phenotype information, expert-curated descriptions derived from UniProt, TAIR and NCBI GeneRIF, as well as references to provide clues for functional studies of TFs. To help identify evolutionary relationship among identified TFs, we assigned 69 450 TFs into 3924 orthologous groups, and constructed 9217 phylogenetic trees for TFs within the same families or same orthologous groups, respectively. In addition, we set up a TF prediction server in this version for users to identify TFs from their own sequences.
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The Pfam protein families database
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Cited by
Emms, D. M., & Kelly, S. (2015) · Genome Biology · doi:10.1186/s13059-015-0721-2 · Cited by 3,408
Salih, H., Gong, W., He, S., Sun, G., Sun, J., & Du, X. (2016) · BMC Genetics · doi:10.1186/s12863-016-0436-8 · Cited by 146
Zhao, M., Zhang, B., Lisch, D., & Ma, J. (2017) · The Plant Cell · doi:10.1105/tpc.17.00595 · Cited by 134
Xiao, Q., Wang, Y., Du, J., Li, H., Wei, B., Wang, Y., Li, Y., Yu, G., Liu, H., Zhang, J., et al. (2017) · The FEBS Journal · doi:10.1111/febs.14179 · Cited by 86
Baldoni, E., Frugis, G., Martinelli, F., Benny, J., Paffetti, D., & Buti, M. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222313062 · Cited by 41
Metadata
- Authors
- Jin, J., Zhang, H., Kong, L., Gao, G., & Luo, J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2013-10-29
- Volume
- 42
- Issue
- D1
- Pages
- D1182-D1187
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2127968944
- Cited by
- 963
- References
- 39
- FWCI
- 91.26
- Type
- journal article
- Language
- en
- Open access
- gold
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- Jin, J., Zhang, H., Kong, L., Gao, G., & Luo, J. (2014). PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Research. https://doi.org/10.1093/nar/gkt1016
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