Cited by 82MicroRNA in disease regulationCancer-related molecular mechanisms researchPlant Molecular Biology Research

Nuclear miR-122 directly regulates the biogenesis of cell survival oncomiR miR-21 at the posttranscriptional level

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Wang, Dong, Sun, Xinlei, Wei, Yao, Liang, Hongwei, Yuan, Min, Jin, Fangfang, Chen, Xi, Liu, Yuan +3 more·2018·Nucleic Acids Research

Abstract

Hepatic miR-122 can serve as a pro-apoptotic factor to suppress tumorigenesis. The underlying mechanism, however, remains incompletely understood. Here we present the first evidence that miR-122 promotes hepatocellular carcinoma cell apoptosis through directly silencing the biogenesis of cell survival oncomiR miR-21 at posttranscriptional level. We find that miR-122 is strongly expressed in primary liver cell nucleus but its nuclear localization is markedly decreased in transformed cells particularly in chemoresistant tumor cells. MiRNA profiling and RT-qPCR confirm an inverse correlation between miR-122 and miR-21 in hepatocellular carcinoma tissues/cells, and increasing or decreasing nuclear level of miR-122 respectively reduces or increases miR-21 expression. Mechanistically, nuclear miR-122 suppresses miR-21 maturation via binding to a 19-nt UG-containing recognition element in the basal region of pri-miR-21 and preventing the Drosha-DGCR8 microprocessor's conversion of pri-miR-21 into pre-miR-21. Furthermore, both in vitro and in vivo studies demonstrate that nuclear miR-122 participates in the regulation of HCC cell apoptosis through modulating the miR-21-targeted programmed cell death 4 (PDCD4) signal pathway.

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  1. [1]Ambros V. The functions of animal microRNAs. Nature. 2004; 431: 350– 355. 15372042
  2. [2]Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004; 116: 281– 297. 14744438
  3. [3]Lee Y., Ahn C., Han J., Choi H., Kim J., Yim J., Lee J., Provost P., Radmark O., Kim S. The nuclear RNase III Drosha initiates microRNA processing. Nature. 2003; 425: 415– 419. 14508493
  4. [4]Lee Y., Jeon K., Lee J.T., Kim S., Kim V.N. MicroRNA maturation: stepwise processing and subcellular localization. EMBO J. 2002; 21: 4663– 4670. 12198168 PMC126204
  5. [5]Lund E., Guttinger S., Calado A., Dahlberg J.E., Kutay U. Nuclear export of microRNA precursors. Science. 2004; 303: 95– 98. 14631048
  6. [6]Kim V.N. MicroRNA precursors in motion: exportin-5 mediates their nuclear export. Trends Cell Biol. 2004; 14: 156– 159. 15134074
  7. [7]Zeng Y., Yi R., Cullen B.R. MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms. Proc. Natl. Acad. Sci. U.S.A. 2003; 100: 9779– 9784. 12902540 PMC187842
  8. [8]Filipowicz W., Jaskiewicz L., Kolb F.A., Pillai R.S. Post-transcriptional gene silencing by siRNAs and miRNAs. Curr. Opin. Struct. Biol. 2005; 15: 331– 341. 15925505
  9. [9]Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell. 2009; 136: 215– 233. 19167326 PMC3794896
  10. [10]Meister G., Landthaler M., Patkaniowska A., Dorsett Y., Teng G., Tuschl T. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol. Cell. 2004; 15: 185– 197. 15260970
  11. [11]Hwang H.W., Wentzel E.A., Mendell J.T. A hexanucleotide element directs microRNA nuclear import. Science. 2007; 315: 97– 100. 17204650
  12. [12]Foldes-Papp Z., Konig K., Studier H., Buckle R., Breunig H.G., Uchugonova A., Kostner G.M. Trafficking of mature miRNA-122 into the nucleus of live liver cells. Curr. Pharmaceut. Biotechnol. 2009; 10: 569– 578. 19619125
  13. [13]Gagnon K.T., Li L., Chu Y., Janowski B.A., Corey D.R. RNAi factors are present and active in human cell nuclei. Cell Rep. 2014; 6: 211– 221. 24388755 PMC3916906
  14. [14]Robb G.B., Brown K.M., Khurana J., Rana T.M. Specific and potent RNAi in the nucleus of human cells. Nat. Struct. Mol. Biol. 2005; 12: 133– 137. 15643423
  15. [15]Politz J.C., Hogan E.M., Pederson T. MicroRNAs with a nucleolar location. RNA. 2009; 15: 1705– 1715. 19628621 PMC2743059
  16. [16]Liao J.Y., Ma L.M., Guo Y.H., Zhang Y.C., Zhou H., Shao P., Chen Y.Q., Qu L.H. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers. PLoS One. 2010; 5: e10563. 20498841 PMC2871053
  17. [17]Jeffries C.D., Fried H.M., Perkins D.O. Nuclear and cytoplasmic localization of neural stem cell microRNAs. RNA. 2011; 17: 675– 686. 21363885 PMC3062178
  18. [18]Khudayberdiev S.A., Zampa F., Rajman M., Schratt G. A comprehensive characterization of the nuclear microRNA repertoire of post-mitotic neurons. Front. Mol. Neurosci. 2013; 6: 43. 24324399 PMC3840315
  19. [19]Park C.W., Zeng Y., Zhang X., Subramanian S., Steer C.J. Mature microRNAs identified in highly purified nuclei from HCT116 colon cancer cells. RNA Biol. 2010; 7: 606– 614. 20864815 PMC3073257
  20. [20]Chu Y., Yue X., Younger S.T., Janowski B.A., Corey D.R. Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter. Nucleic Acids Res. 2010; 38: 7736– 7748. 20675357 PMC2995069
  21. [21]Ohrt T., Mutze J., Staroske W., Weinmann L., Hock J., Crell K., Meister G., Schwille P. Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells. Nucleic Acids Res. 2008; 36: 6439– 6449. 18842624 PMC2582625
  22. [22]Nishi K., Nishi A., Nagasawa T., Ui-Tei K. Human TNRC6A is an Argonaute-navigator protein for microRNA-mediated gene silencing in the nucleus. R,NA. 2013; 19: 17– 35. PMC3527724 23150874
  23. [23]Tang R., Li L., Zhu D., Hou D., Cao T., Gu H., Zhang J., Chen J., Zhang C.Y., Zen K. Mouse miRNA-709 directly regulates miRNA-15a/16-1 biogenesis at the posttranscriptional level in the nucleus: evidence for a microRNA hierarchy system. Cell Research. 2012; 22: 504– 515. 21862971 PMC3292299
  24. [24]Zisoulis D.G., Kai Z.S., Chang R.K., Pasquinelli A.E. Autoregulation of microRNA biogenesis by let-7 and Argonaute. Nature. 2012; 486: 541– 544. 22722835 PMC3387326
  25. [25]Chang J., Nicolas E., Marks D., Sander C., Lerro A., Buendia M.A., Xu C., Mason W.S., Moloshok T., Bort R. miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1. RNA Biol. 2004; 1: 106– 113. 17179747
  26. [26]Lin C.J., Gong H.Y., Tseng H.C., Wang W.L., Wu J.L. miR-122 targets an anti-apoptotic gene, Bcl-w, in human hepatocellular carcinoma cell lines. Biochem. Biophys. Res. Commun. 2008; 375: 315– 320. 18692484
  27. [27]Coulouarn C., Factor V.M., Andersen J.B., Durkin M.E., Thorgeirsson S.S. Loss of miR-122 expression in liver cancer correlates with suppression of the hepatic phenotype and gain of metastatic properties. Oncogene. 2009; 28: 3526– 3536. 19617899 PMC3492882
  28. [28]Tsai W.C., Hsu P.W., Lai T.C., Chau G.Y., Lin C.W., Chen C.M., Lin C.D., Liao Y.L., Wang J.L., Chau Y.P. MicroRNA-122, a tumor suppressor microRNA that regulates intrahepatic metastasis of hepatocellular carcinoma. Hepatology. 2009; 49: 1571– 1582. 19296470
  29. [29]Kutay H., Bai S., Datta J., Motiwala T., Pogribny I., Frankel W., Jacob S.T., Ghoshal K. Downregulation of miR-122 in the rodent and human hepatocellular carcinomas. J. Cell. Biochem. 2006; 99: 671– 678. 16924677 PMC3033198
  30. [30]Bai S., Nasser M.W., Wang B., Hsu S.H., Datta J., Kutay H., Yadav A., Nuovo G., Kumar P., Ghoshal K. MicroRNA-122 inhibits tumorigenic properties of hepatocellular carcinoma cells and sensitizes these cells to sorafenib. J. Biol. Chem. 2009; 284: 32015– 32027. 19726678 PMC2797273
  31. [31]Xu Y., Huang J., Ma L., Shan J., Shen J., Yang Z., Liu L., Luo Y., Yao C., Qian C. MicroRNA-122 confers sorafenib resistance to hepatocellular carcinoma cells by targeting IGF-1R to regulate RAS/RAF/ERK signaling pathways. Cancer Lett. 2016; 371: 171– 181. 26655273
  32. [33]Tomimaru Y., Eguchi H., Nagano H., Wada H., Tomokuni A., Kobayashi S., Marubashi S., Takeda Y., Tanemura M., Umeshita K. MicroRNA-21 induces resistance to the anti-tumour effect of interferon-alpha/5-fluorouracil in hepatocellular carcinoma cells. Br. J. Cancer. 2010; 103: 1617– 1626. 20978511 PMC2990590
  33. [34]Medina P.P., Nolde M., Slack F.J. OncomiR addiction in an in vivo model of microRNA-21-induced pre-B-cell lymphoma. Nature. 2010; 467: 86– 90. 20693987
  34. [35]Liu C., Yu J., Yu S., Lavker R.M., Cai L., Liu W., Yang K., He X., Chen S. MicroRNA-21 acts as an oncomir through multiple targets in human hepatocellular carcinoma. J. Hepatol. 2010; 53: 98– 107. 20447717
  35. [36]Li W.C., Ralphs K.L., Tosh D. Isolation and culture of adult mouse hepatocytes. Methods Mol. Biol. 2010; 633: 185– 196. 20204628
  36. [37]Luo Y., Wang C., Chen X., Zhong T., Cai X., Chen S., Shi Y., Hu J., Guan X., Xia Z. Increased serum and urinary microRNAs in children with idiopathic nephrotic syndrome. Clin. Chem. 2013; 59: 658– 666. 23344497
  37. [38]Schmittgen T.D., Lee E.J., Jiang J., Sarkar A., Yang L., Elton T.S., Chen C. Real-time PCR quantification of precursor and mature microRNA. Methods. 2008; 44: 31– 38. 18158130 PMC2663046
  38. [39]Dixon-McIver A., East P., Mein C.A., Cazier J.B., Molloy G., Chaplin T., Andrew Lister T., Young B.D., Debernardi S. Distinctive patterns of microRNA expression associated with karyotype in acute myeloid leukaemia. PLoS One. 2008; 3: e2141. 18478077 PMC2373886
  39. [40]Sempere L.F., Preis M., Yezefski T., Ouyang H., Suriawinata A.A., Silahtaroglu A., Conejo-Garcia J.R., Kauppinen S., Wells W., Korc M. Fluorescence-based codetection with protein markers reveals distinct cellular compartments for altered MicroRNA expression in solid tumors. Clin. Cancer Res. 2010; 16: 4246– 4255. 20682703 PMC3229296
  40. [41]Diaz J.P., Chirayil R., Chirayil S., Tom M., Head K.J., Luebke K.J. Association of a peptoid ligand with the apical loop of pri-miR-21 inhibits cleavage by Drosha. RNA. 2014; 20: 528– 539. 24497550 PMC3964914
  41. [42]Kim S.W., Li Z., Moore P.S., Monaghan A.P., Chang Y., Nichols M., John B. A sensitive non-radioactive northern blot method to detect small RNAs. Nucleic Acids Res. 2010; 38: e98. 20081203 PMC2853138
  42. [43]Wei Y., Li L., Wang D., Zhang C.Y., Zen K. Importin 8 regulates the transport of mature microRNAs into the cell nucleus. J. Biol. Chem. 2014; 289: 10270– 10275. 24596094 PMC4036152
  43. [44]Liang H.W., Wang N., Wang Y., Wang F., Fu Z., Yan X., Zhu H., Diao W., Ding Y., Chen X. Hepatitis B virus-human chimeric transcript HBx-LINE1 promotes hepatic injury via sequestering cellular microRNA-122. J. Hepatol. 2016; 64: 278– 291. 26409216
  44. [45]Zeisel M.B., Pfeffer S., Baumert T.F. miR-122 acts as a tumor suppressor in hepatocarcinogenesis in vivo. J. Hepatol. 2013; 58: 821– 823. 23085250
  45. [46]Wen J., Friedman J.R. miR-122 regulates hepatic lipid metabolism and tumor suppression. J. Clin. Invest. 2012; 122: 2773– 2776. 22820284 PMC3408753
  46. [47]Davis B.N., Hilyard A.C., Lagna G., Hata A. SMAD proteins control DROSHA-mediated microRNA maturation. Nature. 2008; 454: 56– 61. 18548003 PMC2653422
  47. [48]Bail S., Swerdel M., Liu H., Jiao X., Goff L.A., Hart R.P., Kiledjian M. Differential regulation of microRNA stability. RNA. 2010; 16: 1032– 1039. 20348442 PMC2856875
  48. [49]Rehmsmeier M., Steffen P., Hochsmann M., Giegerich R. Fast and effective prediction of microRNA/target duplexes. RNA. 2004; 10: 1507– 1517. 15383676 PMC1370637
  49. [50]Buscaglia L.E., Li Y. Apoptosis and the target genes of microRNA-21. Chin. J. Cancer. 2011; 30: 371– 380. 21627859 PMC3319771
  50. [51]Chan J.A., Krichevsky A.M., Kosik K.S. MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells. Cancer Res. 2005; 65: 6029– 6033. 16024602
  51. [52]Meng F., Henson R., Wehbe-Janek H., Ghoshal K., Jacob S.T., Patel T. MicroRNA-21 regulates expression of the PTEN tumor suppressor gene in human hepatocellular cancer. Gastroenterology. 2007; 133: 647– 658. 17681183 PMC4285346
  52. [53]Si M.L., Zhu S., Wu H., Lu Z., Wu F., Mo Y.Y. miR-21-mediated tumor growth. Oncogene. 2007; 26: 2799– 2803. 17072344
  53. [54]Zhu S., Wu H., Wu F., Nie D., Sheng S., Mo Y.Y. MicroRNA-21 targets tumor suppressor genes in invasion and metastasis. Cell Res. 2008; 18: 350– 359. 18270520
  54. [55]Asangani I.A., Rasheed S.A., Nikolova D.A., Leupold J.H., Colburn N.H., Post S., Allgayer H. MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer. Oncogene. 2008; 27: 2128– 2136. 17968323
  55. [56]Frankel L.B., Christoffersen N.R., Jacobsen A., Lindow M., Krogh A., Lund A.H. Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells. J. Biol. Chem. 2008; 283: 1026– 1033. 17991735
  56. [57]Gao J., Zhao N., Knutson M.D., Enns C.A. The hereditary hemochromatosis protein, HFE, inhibits iron uptake via down-regulation of Zip14 in HepG2 cells. J. Biol. Chem. 2008; 283: 21462– 21468. 18524764 PMC2490774
  57. [58]Pitchiaya S., Heinicke L.A., Park J.I., Cameron E.L., Walter N.G. Resolving Subcellular miRNA Trafficking and Turnover at Single-Molecule Resolution. Cell Rep. 2017; 19: 630– 642. 28423324 PMC5482240
  58. [59]Castanotto D., Lingeman R., Riggs A.D., Rossi J.J. CRM1 mediates nuclear-cytoplasmic shuttling of mature microRNAs. Proc. Natl. Acad. Sci. U.S.A. 2009; 106: 21655– 21659. 19955415 PMC2787469
  59. [60]Iorio M.V., Ferracin M., Liu C.G., Veronese A., Spizzo R., Sabbioni S., Magri E., Pedriali M., Fabbri M., Campiglio M. MicroRNA gene expression deregulation in human breast cancer. Cancer Res. 2005; 65: 7065– 7070. 16103053
  60. [61]Schetter A.J., Leung S.Y., Sohn J.J., Zanetti K.A., Bowman E.D., Yanaihara N., Yuen S.T., Chan T.L., Kwong D.L., Au G.K. MicroRNA expression profiles associated with prognosis and therapeutic outcome in colon adenocarcinoma. JAMA. 2008; 299: 425– 436. 18230780 PMC2614237
  61. [62]Trabucchi M., Briata P., Garcia-Mayoral M., Haase A.D., Filipowicz W., Ramos A., Gherzi R., Rosenfeld M.G. The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature. 2009; 459: 1010– 1014. 19458619 PMC2768332
  62. [63]Han J., Lee Y., Yeom K.H., Nam J.W., Heo I., Rhee J.K., Sohn S.Y., Cho Y., Zhang B.T., Kim V.N. Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell. 2006; 125: 887– 901. 16751099
  63. [64]Auyeung V.C., Ulitsky I., McGeary S.E., Bartel D.P. Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing. Cell. 2013; 152: 844– 858. 23415231 PMC3707628

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Authors
Wang, D., Sun, X., Wei, Y., Liang, H., Yuan, M., Jin, F., Chen, X., Liu, Y., Zhang, C.-Y., Li, L., & Zen, K.
Affiliations
  • China Pharmaceutical University (CN)
  • State Key Laboratory of Pharmaceutical Biotechnology (CN)
  • State Key Laboratory of Pharmaceutical Biotechnology, Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, Nanjing Advanced Institute for Life Sciences, School of Life Sciences, Nanjing University, Nanjing, Jiangsu 210093, China
  • Georgia State University (US)
Corresponding author
  • Zhang, Chen-Yu
  • Li, Limin
  • Zen, Ke
Venue
Nucleic Acids Research
Published
2017-12-14
Volume
46
Issue
4
Pages
2012-2029
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2772545773
Cited by
82
References
1
Citations by year
2026: 4 · 2025: 11 · 2024: 14 · 2023: 9 · 2022: 12 · 2021: 13 · 2020: 7 · 2019: 6 · 2018: 6
FWCI
1.75
Type
journal article
Language
en
Open access
Locations
  • Nucleic Acids Research (publishedVersion, cc-by-nc)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
Funders
  • Georgia State University
  • National Natural Science Foundation of China (91640103, 31770981, 31670917)
  • Government of Jiangsu Province
  • Natural Science Foundation of Jiangsu Province (BK20170076)
  • Six Talent Peaks Project in Jiangsu Province
  • Fundamental Research Funds for the Central Universities (020814380039, 020814380082)
  • National Institute of Allergy and Infectious Diseases (R01AI106839)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
Keywords
miR-122, miR-21, hepatocellular carcinoma, post-transcriptional regulation, apoptosis, PDCD4, chemoresistance
MeSH terms
Animals, Cell Line, Cell Nucleus, Cells, Cultured, Carcinoma, Hepatocellular, Humans, Liver, Liver Neoplasms, Male, Mice, Inbred C57BL, RNA Precursors, RNA Processing, Post-Transcriptional, Gene Expression Regulation, Neoplastic, Mice, SCID, RNA-Binding Proteins, Apoptosis, Drug Resistance, Neoplasm, MicroRNAs, Cell Line, Tumor, Apoptosis Regulatory Proteins

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