Cited by 278RNA Interference and Gene DeliveryDNA and Nucleic Acid ChemistryRNA and protein synthesis mechanisms

Impact of enhanced metabolic stability on pharmacokinetics and pharmacodynamics of GalNAc–siRNA conjugates

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Nair, Jayaprakash K., Attarwala, Husain, Sehgal, Alfica, Wang, Qianfan, Aluri, Krishna, Zhang, Xuemei, Gao, Minggeng, Liu, Ju +16 more·2017·Nucleic Acids Research

Abstract

Covalent attachment of a synthetic triantennary N-acetylagalactosamine (GalNAc) ligand to chemically modified siRNA has enabled asialoglycoprotein (ASGPR)-mediated targeted delivery of therapeutically active siRNAs to hepatocytes in vivo. This approach has become transformative for the delivery of RNAi therapeutics as well as other classes of investigational oligonucleotide therapeutics to the liver. For efficient functional delivery of intact drug into the desired subcellular compartment, however, it is critical that the nucleic acids are stabilized against nucleolytic degradation. Here, we compared two siRNAs of the same sequence but with different modification pattern resulting in different degrees of protection against nuclease activity. In vitro stability studies in different biological matrices show that 5'-exonuclease is the most prevalent nuclease activity in endo-lysosomal compartments and that additional stabilization in the 5'-regions of both siRNA strands significantly enhances the overall metabolic stability of GalNAc-siRNA conjugates. In good agreement with in vitro findings, the enhanced stability translated into substantially improved liver exposure, gene silencing efficacy and duration of effect in mice. Follow-up studies with a second set of conjugates targeting a different transcript confirmed the previous results, provided additional insights into kinetics of RISC loading and demonstrated excellent translation to non-human primates.

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Crossref · 10.1093/nar/gkx818

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  • The naturally occurring RNAi pathway can be harnessed in extrahepatic organs by building on nearly two decades of liver siRNA design optimization, but novel delivery approaches are needed.

    “The naturally occurring RNAi pathway can also be harnessed in extrahepatic organs by building on nearly two decades of efforts on liver siRNA design optimization [9][10][11][12] ; however, novel delivery approaches are needed.”

    From Expanding RNAi therapeutics to extrahepatic tissues with lipophilic conjugates (2022) · cites this paper as [11]

    The Introduction describes advances in siRNA design and chemistry and explains how GalNAc conjugation enables delivery to the liver. It does not establish a nearly two-decade period of liver optimization or address whether those designs can be applied to extrahepatic organs. The statement that novel delivery approaches are needed follows the citation rather than being directly attributed to it. (LLM, conf=0.82)

    Experimental — accuracy not yet measured
  • The most clinically-advanced siRNA conjugate is the multi-valent GalNAc, which drives delivery to and silencing in the liver.

    “Indeed, the most clinically-advanced siRNA conjugate is the multi-valent N-acetylgalactosamine (GalNAc)21, which drives delivery to and silencing in the liver.”

    From A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system (2019) · cites this paper as [21]

    The Introduction (page unavailable) describes triantennary GalNAc as enabling efficient siRNA delivery to the liver, and the Results and Discussion report liver gene silencing. The Conclusion mentions programs progressing into clinical development, but the paper does not establish that GalNAc is the most clinically advanced siRNA conjugate compared with others. (LLM, conf=0.85)

    Experimental — accuracy not yet measured

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  1. [2]Zimmermann T.S., Karsten V., Chan A., Chiesa J., Boyce M., Bettencourt B.R., Hutabarat R., Nochur S., Vaishnaw A., Gollob J. Clinical proof of concept for a novel hepatocyte-targeting GalNAc–siRNA conjugate. Mol. Ther. 2017; 25: 71– 78. 28129130 PMC5363199
  2. [3]Wittrup A., Lieberman J. Knocking down disease: a progress report on siRNA therapeutics. Nat. Rev. Genet. 2015; 16: 543– 552. 26281785 PMC4756474
  3. [4]Nair J.K., Willoughby J.L., Chan A., Charisse K., Alam M.R., Wang Q., Hoekstra M., Kandasamy P., Kel’in A.V., Milstein S. Multivalent N-acetylgalactosamine-conjugated siRNA localizes in hepatocytes and elicits robust RNAi-mediated gene silencing. J. Am. Chem. Soc. 2014; 136: 16958– 16961. 25434769
  4. [5]Rensen P.C., Sliedregt L.A., Ferns M., Kieviet E., van Rossenberg S.M., van Leeuwen S.H., van Berkel T.J., Biessen E.A. Determination of the upper size limit for uptake and processing of ligands by the asialoglycoprotein receptor on hepatocytes in vitro and in vivo. J. Biol. Chem. 2001; 276: 37577– 37584. 11479285
  5. [6]Rensen P.C., van Leeuwen S.H., Sliedregt L.A., van Berkel T.J., Biessen E.A. Design and synthesis of novel N-acetylgalactosamine-terminated glycolipids for targeting of lipoproteins to the hepatic asialoglycoprotein receptor. J. Med. Chem. 2004; 47: 5798– 5808. 15509179
  6. [7]Biessen E.A., Noorman F., van Teijlingen M.E., Kuiper J., Barrett-Bergshoeff M., Bijsterbosch M.K., Rijken D.C., van Berkel T.J. Lysine-based cluster mannosides that inhibit ligand binding to the human mannose receptor at nanomolar concentration. J. Biol. Chem. 1996; 271: 28024– 28030. 8910412
  7. [8]Biessen E.A., Vietsch H., van Berkel T.J. Induction of hepatic uptake of lipoprotein(a) by cholesterol-derivatized cluster galactosides. Arterioscler. Thromb. Vasc. Biol. 1996; 16: 1552– 1558. 8977461
  8. [9]Huang X., Leroux J.C., Castagner B. Well-defined multivalent ligands for hepatocytes targeting via asialoglycoprotein receptor. Bioconj. Chem. 2017; 28: 283– 295. 27966887
  9. [10]Rajeev K.G., Nair J.K., Jayaraman M., Charisse K., Taneja N., O'Shea J., Willoughby J.L., Yucius K., Nguyen T., Shulga-Morskaya S. Hepatocyte-specific delivery of siRNAs conjugated to novel non-nucleosidic trivalent N-acetylgalactosamine elicits robust gene silencing in vivo. ChemBioChem. 2015; 16: 903– 908. 25786782
  10. [11]Matsuda S., Keiser K., Nair J.K., Charisse K., Manoharan R.M., Kretschmer P., Peng C.G., A V.K.i., Kandasamy P., Willoughby J.L. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes. ACS Chem. Biol. 2015; 10: 1181– 1187. 25730476
  11. [12]Migawa M.T., Prakash T.P., Vasquez G., Wan W.B., Yu J., Kinberger G.A., Ostergaard M.E., Swayze E.E., Seth P.P. A convenient synthesis of 5′-triantennary N-acetyl-galactosamine clusters based on nitromethanetrispropionic acid. Bioorg. Med. Chem. Lett. 2016; 26: 2194– 2197. 27025342
  12. [13]Prakash T.P., Graham M.J., Yu J., Carty R., Low A., Chappell A., Schmidt K., Zhao C., Aghajan M., Murray H.F. Targeted delivery of antisense oligonucleotides to hepatocytes using triantennary N-acetyl galactosamine improves potency 10-fold in mice. Nucleic Acids Res. 2014; 42: 8796– 8807. 24992960 PMC4117763
  13. [14]Prakash T.P., Yu J., Migawa M.T., Kinberger G.A., Wan W.B., Ostergaard M.E., Carty R.L., Vasquez G., Low A., Chappell A. Comprehensive structure-activity relationship of triantennary N-acetylgalactosamine conjugated antisense oligonucleotides for targeted delivery to hepatocytes. J. Med. Chem. 2016; 59: 2718– 2733. 26914862
  14. [15]Yu R.Z., Graham M.J., Post N., Riney S., Zanardi T., Hall S., Burkey J., Shemesh C.S., Prakash T.P., Seth P.P. Disposition and pharmacology of a GalNAc3-conjugated ASO targeting human lipoprotein (a) in mice. Mol. Ther.-Nucleic Acids. 2016; 5: e317. 27138177 PMC5014512
  15. [16]Yu R.Z., Gunawan R., Post N., Zanardi T., Hall S., Burkey J., Kim T.W., Graham M.J., Prakash T.P., Seth P.P. Disposition and pharmacokinetics of a GalNAc3-conjugated antisense oligonucleotide targeting human lipoprotein (a) in monkeys. Nucleic Acid Ther. 2016; 26: 372– 380. 27500733
  16. [17]Mukherjee D., Fritz D.T., Kilpatrick W.J., Gao M., Wilusz J. Analysis of RNA exonucleolytic activities in cellular extracts. Methods Mol. Biol. 2004; 257: 193– 212. 14770007
  17. [18]Cummins L.L., Owens S.R., Risen L.M., Lesnik E.A., Freier S.M., McGee D., Guinosso C.J., Cook P.D. Characterization of fully 2′-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity. Nucleic Acids Res. 1995; 23: 2019– 2024. 7541132 PMC306978
  18. [19]Layzer J.M., McCaffrey A.P., Tanner A.K., Huang Z., Kay M.A., Sullenger B.A. In vivo activity of nuclease-resistant siRNAs. RNA. 2004; 10: 766– 771. 15100431 PMC1370566
  19. [20]Takahashi M., Minakawa N., Matsuda A. Synthesis and characterization of 2′-modified-4′-thioRNA: a comprehensive comparison of nuclease stability. Nucleic Acids Res. 2009; 37: 1353– 1362. 19151085 PMC2651785
  20. [21]Allerson C.R., Sioufi N., Jarres R., Prakash T.P., Naik N., Berdeja A., Wanders L., Griffey R.H., Swayze E.E., Bhat B. Fully 2′-modified oligonucleotide duplexes with improved in vitro potency and stability compared to unmodified small interfering RNA. J. Med. Chem. 2005; 48: 901– 904. 15715458
  21. [22]Prakash T.P., Kinberger G.A., Murray H.M., Chappell A., Riney S., Graham M.J., Lima W.F., Swayze E.E., Seth P.P. Synergistic effect of phosphorothioate, 5′-vinylphosphonate and GalNAc modifications for enhancing activity of synthetic siRNA. Bioorg. Med. Chem. Lett. 2016; 26: 2817– 2820. 27161280
  22. [23]Chan A., Liebow A., Yasuda M., Gan L., Racie T., Maier M., Kuchimanchi S., Foster D., Milstein S., Charisse K. Preclinical development of a subcutaneous ALAS1 RNAi therapeutic for treatment of hepatic porphyrias using circulating RNA quantification. Mol. Ther.-Nucleic Acids. 2015; 4: e263. 26528940 PMC4877445
  23. [24]Liebow A., Li X., Racie T., Hettinger J., Bettencourt B.R., Najafian N., Haslett P., Fitzgerald K., Holmes R.P., Erbe D. An investigational RNAi therapeutic targeting glycolate oxidase reduces oxalate production in models of primary hyperoxaluria. J. Am. Soc. Nephrol. 2017; 28: 494– 503. 27432743 PMC5280024
  24. [25]Sehgal A., Barros S., Ivanciu L., Cooley B., Qin J., Racie T., Hettinger J., Carioto M., Jiang Y., Brodsky J. An RNAi therapeutic targeting antithrombin to rebalance the coagulation system and promote hemostasis in hemophilia. Nat. Med. 2015; 21: 492– 497. 25849132
  25. [26]Beaucage S.L. Solid-phase synthesis of siRNA oligonucleotides. Curr. Opin. Drug Discov. Dev. 2008; 11: 203– 216. 18283608
  26. [27]Mueller S., Wolf J., Ivanov S.A. Current strategies for the synthesis of RNA. Curr. Org. Synth. 2004; 1: 293– 307.
  27. [28]Guzaev A.P. Reactivity of 3H-1,2,4-dithiazole-3-thiones and 3H-1,2-dithiole-3-thiones as sulfurizing agents for oligonucleotide synthesis. Tetrahedron Lett. 2011; 52: 434– 437.
  28. [29]Parmar R., Willoughby J.L., Liu J., Foster D.J., Brigham B., Theile C.S., Charisse K., Akinc A., Guidry E., Pei Y. 5′-(E)-Vinylphosphonate: A Stable Phosphate Mimic Can Improve the RNAi Activity of siRNA-GalNAc Conjugates. Chembiochem. 2016; 17: 985– 989. 27121751
  29. [30]Elkayam E., Parmar R., Brown C.R., Willoughby J.L., Theile C.S., Manoharan M., Joshua-Tor L. siRNA carrying an (E)-vinylphosphonate moiety at the 5′ end of the guide strand augments gene silencing by enhanced binding to human Argonaute-2. Nucleic Acids Res. 2017; 45: 3528– 3536. 27903888 PMC5389677
  30. [31]Pei Y., Hancock P.J., Zhang H., Bartz R., Cherrin C., Innocent N., Pomerantz C.J., Seitzer J., Koser M.L., Abrams M.T. Quantitative evaluation of siRNA delivery in vivo. RNA. 2010; 16: 2553– 2563. 20940339 PMC2995415

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Authors
Nair, J. K., Attarwala, H., Sehgal, A., Wang, Q., Aluri, K., Zhang, X., Gao, M., Liu, J., Indrakanti, R., Schofield, S., Kretschmer, P., Brown, C. R., Gupta, S., Willoughby, J. L. S., Boshar, J. A., Jadhav, V., Charisse, K., Zimmermann, T., Fitzgerald, K., Manoharan, M., Rajeev, K. G., Akinc, A., Hutabarat, R., & Maier, M. A.
Affiliations
Alnylam Pharmaceuticals (United States) (US)
Corresponding author
Maier, Martin A.
Venue
Nucleic Acids Research
Published
2017-09-15
Volume
45
Issue
19
Pages
10969-10977
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2756425540
Cited by
278
References
1
Citations by year
2026: 32 · 2025: 37 · 2024: 45 · 2023: 28 · 2022: 25 · 2021: 32 · 2020: 37 · 2019: 22 · 2018: 20
FWCI
8.83
Type
journal article
Language
en
Open access
Locations
  • Nucleic Acids Research (publishedVersion, cc-by-nc)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
Funders
Alnylam Pharmaceuticals
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
Keywords
nuclease resistance, 5' exonuclease, siRNA modification, RNAi therapeutics, liver targeting, asialoglycoprotein receptor, gene silencing, oligonucleotide therapeutics, non-human primates
MeSH terms
Acetylgalactosamine, Animals, Humans, Kidney, Liver, Male, Metabolic Clearance Rate, Mice, Inbred C57BL, Drug Delivery Systems, Area Under Curve, RNA Interference, RNA, Small Interfering

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