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CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
Open accessAbstract
Classical simulations of protein flexibility remain computationally expensive, especially for large proteins. A few years ago, we developed a fast method for predicting protein structure fluctuations that uses a single protein model as the input. The method has been made available as the CABS-flex web server and applied in numerous studies of protein structure-function relationships. Here, we present a major update of the CABS-flex web server to version 2.0. The new features include: extension of the method to significantly larger and multimeric proteins, customizable distance restraints and simulation parameters, contact maps and a new, enhanced web server interface. CABS-flex 2.0 is freely available at http://biocomp.chem.uw.edu.pl/CABSflex2.
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MAVISp: A Modular Structure-Based Framework for Protein Variant Effects
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Metadata
- Authors
- Kuriata, A., Gierut, A. M., Oleniecki, T., Ciemny, M. P., Kolinski, A., Kurcinski, M., & Kmiecik, S.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-05-14
- Volume
- 46
- Issue
- W1
- Pages
- W338-W343
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2788954552
- Cited by
- 453
- References
- 0
- FWCI
- 8.63
- Type
- journal article
- Language
- en
- Open access
- gold
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- Kuriata, A., Gierut, A. M., Oleniecki, T., Ciemny, M. P., Kolinski, A., Kurcinski, M., & Kmiecik, S. (2018). CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures. Nucleic Acids Research. https://doi.org/10.1093/nar/gky356
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