The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
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Trimming too much data may remove important phylogenetic signal.
“tr imming t oo muc h data may in fact remove im portan t phylogenet ic sig na l ( Tan et a l. 2015 )”
From Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc (2024) · cites this paper as Tan et al. 2015
Alignments containing too much missing data in too many species are not generally useful for inferring substitution rates.
“alignments containing too much missing data in too many species are n ot gen era l ly usefu l f or inf er r ing s ubs ti tu tio n rates”
From Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc (2024) · cites this paper as Tan et al. 2015
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Cites
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010) · Systematic Biology · doi:10.1093/sysbio/syq010 · Cited by 18,376
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
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Dating of the human–ape splitting by a molecular clock of mitochondrial DNA.
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Self-citationAlignment Uncertainty and Genomic Analysis
Wong, K. M., Suchard, M. A., & Huelsenbeck, J. P. (2008) · Science · doi:10.1126/science.1151532 · Cited by 411
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Cited by
Sorted by citations
Asnicar, F., Thomas, A. M., Beghini, F., Mengoni, C., Manara, S., Manghi, P., Zhu, Q., Bolzan, M., Cumbo, F., May, U., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-16366-7 · Cited by 869
Pitfalls in supermatrix phylogenomics
Philippe, H., Vienne, D. M. D., Ranwez, V., Roure, B., Baurain, D., & Delsuc, F. (2017) · European Journal of Taxonomy · doi:10.5852/ejt.2017.283 · Cited by 173
Horizontal gene transfer constrains the timing of methanogen evolution
Wolfe, J. M., & Fournier, G. P. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0513-7 · Cited by 160
Thomas, G. W. C., Gemmell, P., Shakya, S. B., Hu, Z., Liu, J. S., Sackton, T. B., & Edwards, S. V. (2024) · Integrative And Comparative Biology · doi:10.1093/icb/icae056 · Cited by 5
Metadata
- Authors
- Tan, G., Muffato, M., Ledergerber, C., Herrero, J., Goldman, N., Gil, M., & Dessimoz, C.
- Venue
- Systematic Biology
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-06-01
- Volume
- 64
- Issue
- 5
- Pages
- 778-791
- ISSN
- 1063-5157
- 1076-836X
- PMC
- PMC4538881
- Cited by
- 261
- References
- 5
- Language
- en
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