The DOI matches its Crossref record; 122 of the 123 references it cites were found in a registry or an index.
A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data
Open accessAbstract
Passerine birds comprise over half of avian diversity, but have proved difficult to classify. Despite a long history of work on this group, no comprehensive hypothesis of passerine family-level relationships was available until recent analyses of DNA-DNA hybridization data. Unfortunately, given the value of such a hypothesis in comparative studies of passerine ecology and behaviour, the DNA-hybridization results have not been well tested using independent data and analytical approaches. Therefore, we analysed nucleotide sequence variation at the nuclear RAG-1 and c-mos genes from 69 passerine taxa, including representatives of most currently recognized families. In contradiction to previous DNA-hybridization studies, our analyses suggest paraphyly of suboscine passerines because the suboscine New Zealand wren Acanthisitta was found to be sister to all other passerines. Additionally, we reconstructed the parvorder Corvida as a basal paraphyletic grade within the oscine passerines. Finally, we found strong evidence that several family-level taxa are misplaced in the hybridization results, including the Alaudidae, Irenidae, and Melanocharitidae. The hypothesis of relationships we present here suggests that the oscine passerines arose on the Australian continental plate while it was isolated by oceanic barriers and that a major northern radiation of oscines (i.e. the parvorder Passerida) originated subsequent to dispersal from the south.
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“Core Passeroidea (28) exhibits an early burst with sustained elevated rates relative to other passeriforms.”
From Developmental origins of mosaic evolution in the avian cranium (2018) · cites this paper as [28]
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Sorted by citations
Items 301–376 of 376
Chen, W., Lee, Y., Tsai, C.-F., Yao, C.-T., Chen, Y.-H., Li, S., & Kuo, Y.-M. (2015) · Bijdragen tot de Dierkunde · doi:10.1163/18759866-08403005 · Cited by 9
The late Cenozoic passerine avifauna from Rackham’s Roost Site, Riversleigh, Australia
Nguyen, J. M. T., Hand, S. J., & Archer, M. (2016) · Records of the Australian Museum · doi:10.3853/j.2201-4349.68.2016.1668 · Cited by 10
“This dispersal from Australasia has been estimated to have occurred in the Eocene around 53–34 Ma (Barker et al., 2004; Ericson et al., 2014; but see Mayr, 2013) to even as late as the Oligo-Miocene (Prum et al., 2015; Selvatti et al., 2015), although there is debate about whether this ancestral passeridan lineage dis…”
BackgroundInfluentialCibois, A., Dekker, R. W. R. J., Pasquet, É., & Thibault, J. (2012) · Ibis · doi:10.1111/j.1474-919x.2012.01260.x · Cited by 9
Phenotypic and Niche Evolution in the Antbirds (Aves: Thamnophilidae)
Bravo, G. A. (2012) · doi:10.31390/gradschool_dissertations.4010 · Cited by 9
“We used standard methods described elsewhere (Groth & Barrowclough 1999; Barker et al. 2002; Brumfield & Edwards 2007) to extract genomic DNA from pectoral muscle and to amplify and obtain sequences for six genes.”
MethodNestmate killing by obligate brood parasitic chicks: is this linked to obligate siblicidal behavior?
Wang, N., & Kimball, R. T. (2012) · Journal für Ornithologie · doi:10.1007/s10336-011-0800-4 · Cited by 8
“OBP is found in approximately 90 species of birds among four orders (Passeriformes, Piciformes, Cuculiformes, and Anseriformes) and is thought to have evolved independently seven times (Sorenson and Payne 2002, 2005).”
MethodA new songbird (Aves: Passeriformes) from the mid-Cenozoic of Riversleigh, northwestern Queensland
Boles, W. (2006) · Alcheringa An Australasian Journal of Palaeontology · doi:10.1080/03115510609506853 · Cited by 8
“With the revelation that the major lineages of oscine passerines (Corvida & Passerida sensu Sibley & Ahlquist 1990) originated in Australia (Barker et al. 2000, 2004; Ericson et al. 2000, 2003), either (or both) might be expected at Riversleigh.”
BackgroundTaxonomic recommendations for British birds: Sixth report
Sangster, G., Collinson, J. M., Knox, A. G., Parkin, D. T., & Svensson, L. (2009) · Ibis · doi:10.1111/j.1474-919x.2009.00983.x · Cited by 8
Lei, X., Yin, Z., Lian, Z., Chen, C., Dai, C., Christin, A., & Lei, F. (2010) · Chinese Birds · doi:10.5122/cbirds.2010.0013 · Cited by 7
Zhang, H., Bai, Y., Shi, X., Sun, L., Wang, Z., & Wu, X. (2017) · Genes & Genomics · doi:10.1007/s13258-017-0617-5 · Cited by 7
Williamson, G. J., Christidis, L., Norman, J., Brook, B. W., Mackey, B., & Bowman, D. M. J. S. (2011) · Pacific Conservation Biology · doi:10.1071/pc110354 · Cited by 7
“, vertebrates and invertebrates predators and nectar, fruit or seed feeders) and have strong habitat and niche specificities (Ford and Paton 1985; MacNally 1994; Recher 2004) due to, in part, to a long evolutionary history in Australia (Barker et al. 2002; Ericson et al. 2002).”
BackgroundSexual selection does not influence minisatellite mutation rate
Amos, W. (2009) · BMC Evolutionary Biology · doi:10.1186/1471-2148-9-5 · Cited by 7
“I therefore constructed a phylogenetic tree, based on Moller and Cuervo's figure 1 plus a published phylogeny of the passerines (Figure 3) [ 27 ].”
MethodSex ratio of White Stork Ciconia ciconia in different environments of Poland
Kamiński, P., Grochowska, E., Mroczkowski, S., Jerzak, L., Kasprzak, M., Koim-Puchowska, B. B., Woźniak, A., Ciebiera, O., & Markulak, D. (2015) · Environmental Science and Pollution Research · doi:10.1007/s11356-015-4250-z · Cited by 6
“Only Barker et al. (2002) studied taxonomic and biogeographic implications of nuclear DNA sequence data in passerines.”
BackgroundWeak migratory interchange by birds between Australia and Asia
ROSHIER, D. A., & Joseph, L. (2014) · Cambridge University Press eBooks · doi:10.1017/cbo9781139565424.021 · Cited by 6
Ma, Y., Huang, Y., & Lei, F. (2014) · PubMed Central · doi:10.11813/j.issn.0254-5853.2014.2.081 · Cited by 6
“Our results, meanwhile, are consistent with the majority study conclusions based on DNA sequences (Barker et al, 2002; Ericson et al, 2002), supporting the contention that Menuridae is the sister group with Corvida and Passerida.”
ResultComparative morphology of the avian bony columella
Peacock, J., Spellman, G. M., Field, D. J., Mason, M. J., & Mayr, G. (2023) · The Anatomical Record · doi:10.1002/ar.25278 · Cited by 5
“This is no longer the case, with numerous well-supported phylogenies having been published in recent decades (e.g., Barker et al., 2002; Ericson et al., 2002; Oliveros et al., 2019).”
BackgroundMironov, S. V. (2011) · Proceedings of the Zoological Institute RAS · doi:10.31610/trudyzin/2011.315.4.452 · Cited by 5
“…constitute a distinct phylogenetic lineage occupying a separate position or appearing as the most basic lineage of the superfamily Muscicapoidea (Barker et al. 2002; Alström et al. 2006; Jønsson and Fjeldså 2006; Johansson et al. 2008); sometimes this lineage is even treated as a separate…”
BackgroundInfluentialSystematic notes on Asian birds. 36. A preliminary review of the Chloropseidae and Irenidae
Wells, D., Dickinson, E. C., & Dekker, R. W. R. J. (2003) · Data Archiving and Networked Services (DANS) · Cited by 5
Koenig, W. D., & Dickinson, J. L. (2004) · Cambridge University Press eBooks · doi:10.1017/cbo9780511606816.001 · Cited by 5
Moyle, R. G. (2002) · doi:10.31390/gradschool_dissertations.2956 · Cited by 5
“Phylogenetic hypotheses and molecular clock data for higher-level bird groups support this view (Hedges et al. 1996, Cooper and Penny 1997, Cracraft 2001, Barker et al. 2002).”
Ericson, P. G. P., & Qu, Y. (2024) · Biological Journal of the Linnean Society · doi:10.1093/biolinnean/blae070 · Cited by 4
Phylogeny and Character Change in the Feloid Carnivora
Holliday, J. A. (2007) · Cited by 4
Ferreira, M. M. D., Degrange, F. J., & Tirao, G. A. (2024) · The Journal of Comparative Neurology · doi:10.1002/cne.25617 · Cited by 3
“Passeriformes constitute more than half of the extant avian species (Barker et al., 2002), and this diversification may be related to brain evolution and disparity as Passeriformes conquered most extant niches.”
BackgroundMayr, G. (2018) · Journal für Ornithologie · doi:10.1007/s10336-018-1588-2 · Cited by 3
Psittacopasseres: Psittaciformes (Parrots) and Passeriformes (Passerines)
Mayr, G. (2022) · Fascinating life sciences · doi:10.1007/978-3-030-87645-6_9 · Cited by 4
Worthy, T. H., Scofield, R. P., Hand, S. J., Archer, M., & Pietri, V. L. D. (2025) · Paläontologische Zeitschrift · doi:10.1007/s12542-025-00736-x · Cited by 3
“Not the least of these revelations, was the relationships of Australasian passerines as a paraphyletic grade of taxa as basal members of the Oscine radiation (e.g., Barker et al., 2002; Ericson et al., 2002; Hackett et al., 2008; Stiller et al., 2024).”
Barker, F. K. (2017) · American Museum of Natural History eBooks · doi:10.5962/bhl.title.156749 · Cited by 3
Self-citationChen, D. S., Qian, C. J., Ren, Q. Q., Wang, P., Yuan, J., Jiang, L., Bi, D., Zhang, Q., Wang, Y., & Kan, X. (2015) · Genetics and Molecular Research · doi:10.4238/2015.august.7.5 · Cited by 3
“Recent molecular data suggest that the New Zealand wrens constitute the sister-group to all other passerines (Barker et al., 2002; Ericson et al., 2002; Barker, 2004).”
BackgroundSchodde, R., Boles, W., Christidis, L., Horton, P., Johnstone, R., Joseph, L., & Longmore, W. (2013) · The Bulletin of zoological nomenclature · doi:10.21805/bzn.v70i4.a8 · Cited by 3
“…from other songbird lineages that they have been placed in their own family, CORCORACIDAE (data in Amadon, 1950; Mayr, 1963; Sibley & Ahlquist, 1985, 1990; Baverstock et al., 1992; Schodde & Mason, 1999; Barker et al., 2002, 2004; Ericson et al., 2002; Norman et al., 2009; Jønsson et al., 2011).”
BackgroundMathematisch-naturwissenschaftlichen Fakultät, I. (2006) · Cited by 3
Sychra, O., Kolenčík, S., & Palma, R. L. (2016) · Zootaxa · doi:10.11646/zootaxa.4126.3.5 · Cited by 3
“…(honeyeaters), Maluridae (fairy-wrens), Pardalotidae (pardalotes), Acanthizidae (scrub-birds & thornbills) and the genus Dasyornis (bristleheads) (Barker et al. 2002, 2004)—there are only two species of Myrsidea described from fairy wrens: Myrsidea pectinata Clay, 1965 from Malurus…”
Background10. Hormonal Control of Coloration
Kimball, R. T. (2006) · Harvard University Press eBooks · doi:10.4159/9780674273788-011 · Cited by 3
Phylogenomics of Rapid Avian Radiations
Oliveros, C. H. (2015) · KU ScholarWorks (The University of Kansas) · Cited by 3
Mironov, S. V., & Wauthy, G. (2010) · Springer eBooks · doi:10.1007/978-90-481-9837-5_4 · Cited by 2
Sexual selection, range size and population size
Møller, A. P., & Garamszegi, L. Z. (2012) · Ornis Hungarica · doi:10.2478/orhu-2013-0001 · Cited by 2
“…1999, Voelker 1999, Johnson & clayton 2000, Kennedy et al. 2000, Sheldon et al. 2000, Geffen & YomTov 2001, Johnson et al. 2001, Møller et al. 2001, Barker et al. 2002, Dimcheff et al. 2002, Donne-Goussé et al. 2002, Broders et al. 2003, riesing et al. 2003, cibois & cracraft 2004, Kruckenhauser…”
BackgroundNorambuena, H. V., & Victoriano, P. F. (2020) · Gayana · doi:10.4067/s0717-65382020000100016 · Cited by 2
“INTRODUCCIÓN Las aves del orden Passeriformes, se dividen en dos grandes subórdenes: Passeri, comúnmente conocidas como las aves cantoras oscinas y Tyranni, conocidas como las aves cantoras suboscinas (Sibley & Alquist 1990; Barker et al. 2002).”
BackgroundInvasion ecology of honeyeaters
Norman, J. A., & Christidis, L. (2014) · Cambridge University Press eBooks · doi:10.1017/cbo9781139565424.007 · Cited by 2
Molecular phylogenetics of the New World blackbirds (Icteridae)
Powell, A. F. L. A. (2012) · University of Minnesota Digital Conservancy (University of Minnesota) · Cited by 2
Padrões e processos de diversificação em aves da Amazônia e da Mata Atlântica
Batalha‐Filho, H. (2012) · doi:10.11606/t.41.2012.tde-08032013-090338 · Cited by 2
Systematic notes on Asian birds. 34. A preliminary review of the Aegithinidae
Wells, D., Dickinson, E. C., & Dekker, R. W. R. J. (2003) · The Digital Academic Repository of Naturalis Biodiversity Center (Naturalis Biodiversity Center) · Cited by 2
Durrant, K. L. (2004) · Griffith Research Online · doi:10.25904/1912/2185 · Cited by 2
Oswald, K. N., Edwards, S., Lee, A., Cunningham, S. J., & Smit, B. (2020) · doi:10.22541/au.157901262.24420308 · Cited by 2
Complete Mitochondrial Genome and Phylogenetic Analysis of Turdus pallidus (Passeriformes, Turdidae)
Zhan, Q., Tang, Y., Zhao, X., Xue, X., Chen, Y.-X., & Huang, Y.-L. (2025) · Genes · doi:10.3390/genes16111284 · Cited by 1
“The development of high-throughput sequencing now allows the use of complete mitochondrial genomes, which provide much more genetic information and improve the accuracy of phylogenetic analyses [14].”
ERNST MAYR AND SOUTHWEST PACIFIC BIRDS: INSPIRATION FOR IDEAS ON SPECIATION
Schodde, R. (2005) · Ornithological Monographs · doi:10.2307/40587709 · Cited by 1
Paleogene Avifaunas: A Synopsis of General Biogeographic and Paleoecological Aspects
Mayr, G. (2022) · Fascinating life sciences · doi:10.1007/978-3-030-87645-6_11 · Cited by 1
Evolutionary Variation in Feather Waxes of Passerine Birds
Sweeney, R. J., Lovette, I. J., & Harvey, E. L. (2004) · The Auk · doi:10.1093/auk/121.2.435 · Cited by 1
Diverse cooperative breeding systems in birds.
Eguchi, K. (2005) · Japanese Journal of Ornithology · doi:10.3838/jjo.54.1 · Cited by 1
Phylogenetic relationships of 18 passerines based on Adenylate Kinase Intron 5 sequences
Guo, H., Yu, H.-X., Bai, S., & Ma, Y. (2008) · Journal of Forestry Research · doi:10.1007/s11676-008-0041-4
“Barker et al. (2002) thought that Sibley& Ahlquist’s superfamily Sylvioidea, Passeriodea and Muscicapoidea were not in monophyly.”
BackgroundSociaux, S. S. (2019)
Avian Diversification in the Andes: Understanding Endemism Patterns and Historical Biogeography
Rivero, M. E. Q. (2011) · doi:10.7916/d8348rpf
“Because the split between New Zealand and Antarctica has been suggested as being responsible for the split between Acanthisitta and the rest of the passerine birds (Barker et al., 2002; Ericson et al., 2002; Barker et al., 2004), Irestedt et al.”
BackgroundPaläogene Vögel. Die Vogelschar vor Fink und Star
Mayr, G. (2007) · Biologie in unserer Zeit · doi:10.1002/biuz.200610353
Babblers, Biogeography and Bayesian Reasoning
Gelang, M. (2012) · DiVA (Stockholm University)
Names of bird and mammal species mentioned in the text
Koenig, W. D., & Dickinson, J. L. (2004) · Cambridge University Press eBooks · doi:10.1017/cbo9780511606816.016
Møller, A. P. (2008)
Life-history of Birds in Australian Monsoon Tropics
Eguchi, K. (2010) · Journal of the Yamashina Institute for Ornithology · doi:10.3312/jyio.42.1
“I 258p =l $"[ \]Y P " Y Z{q YZY Y%]i*Hz= i\[ro Corvida [ o ; [ ro Passerida: 64p YZY q s8 t p=t 4 S, (Yom-Tov et al. 1992, Barker et al. 2002, Ericson et al. 2002) $"[ \]Y u P j9 (1\4 ¡¢.”
Eo, S. H., & An, J. (2016) · Mitochondrial DNA Part B · doi:10.1080/23802359.2016.1181996
“The result is similar to those of the phylogenetic trees based on multilocus nuclear genes (Barker et al. 2002, 2004).”
MethodResultThe Functional Significance of Variation in Hematological Traits that Determine Aerobic Capacity
Fronstin, R. B. (2016) · Summit (Simon Fraser University)
Barker, F. K. (2017) · doi:10.5531/sd.sp.28
Self-citationA PRELIMINARY STUDY ON POPULATION OF SOME PASSERIFORMES AT MARALA HEAD
Bhatti, Z., Nazir, F., & Ghufran, A. (2019) · Journal of Bioresource Management · doi:10.35691/jbm.9102.0114
“Tyranni, Passeri) respectively (Barker et al., 2002; Ericson et al., 2002).”
Convergence in Passeriformes species of Kabul province using COX1 mitochondrial gene sequence
Samandari, F., Arianmal, M. S., & Hekmat, A. W. (2020) · International Journal of Chemical Studies · doi:10.22271/chemi.2020.v8.i1ai.8615
“Based on DNA hybridization (Sibley and Ahlquist, 1990) [34] and nuclear gene sequences (Barker et al., 2002) [10], three major clades of sparrows have been shown to conventionally include Sylvioidea, Muscicapoidea and Passeroidea, The final bayesian tree of this research is also shown.”
BackgroundMethodXie, L., Li, M., & Duan, Y. (2021) · Mitochondrial DNA Part B · doi:10.1080/23802359.2021.1875909
“Barker et al (2002) and Fregin et al (2012) also proved it used nucleotide sequence or mitochondrial and nuclear genes.”
MethodRestedt, M. A. I., Hlson, I. O., Ällersjö, M. A. K., & Ricson, G. P. E. (2006)
Emu ’s first 120 years: landmark papers of change in austral ornithology
Joseph, L., Burbidge, A. H., Delhey, K. J. V., Hansen, B. D., Kleindorfer, S., & Maurer, G. (2021) · Emu - Austral Ornithology · doi:10.1080/01584197.2021.1993529
(2004) · Cambridge University Press eBooks · doi:10.1017/cbo9780511606816.017
Interpreting the fossil record and the origination of birdsPreprint
Crouch, N. M. A. (2022) · bioRxiv · doi:10.1101/2022.05.19.492716 · Cited by 1
DNA Barcodes for Estimation of Species Phylogeny in Some Rails (Gruiformes: Rallidae)
Deef, L. E. M., Omar, N., & Khattab, G. M. (2023) · Journal of Advances in Biology & Biotechnology · doi:10.9734/jabb/2023/v26i5636
Fascinating Natural and Biological Traits of Birds
Maina, J. N. (2023) · Zoological monographs · doi:10.1007/978-3-031-35180-8_1
Harding, L. E. (2023) · BENTHAM SCIENCE PUBLISHERS eBooks · doi:10.2174/9789815124873123010017
Sharma, V. K., Patidar, K., Vishwakarma, H., & Patidar, K. C. (2024) · Research Square · doi:10.21203/rs.3.rs-3918719/v1
Page, C. N. (2024) · Cambridge University Press eBooks · doi:10.1017/9781009262965.017
Choi, D.-S., Kim, H.-J., Ko, M., Myung, R.-Y., & Won, Y. (2025) · Zoosystematics and Evolution · doi:10.3897/zse.101.152180
Frith, C., & Pruett‐Jones, S. (2025) · Emu - Austral Ornithology · doi:10.1080/01584197.2026.2616235
“Several DNA studies (Barker et al. 2002, 2004 and most recently; Ericson et al .”
Cuban Gnatcatcher (Polioptila lembeyei)
León, C. P., Dávila, N. V., Kirwan, G. M., & Pyle, P. (2026) · Birds of the World · doi:10.2173/bow.cubgna1.02
Metadata
- Authors
- Barker, F. K., Barrowclough, G. F., & Groth, J. G.
- Affiliations
- American Museum of Natural History (US)
- Corresponding author
- Barker, F. Keith
- Venue
- Proceedings of the Royal Society of London. Series B: Biological Sciences
- Publisher
- The Royal Society
- Published
- 2002-02-07
- Volume
- 269
- Issue
- 1488
- Pages
- 295-308
- ISSN
- 0080-4649 (ISSN-L)
- 0962-8452
- 1471-2954
- PMC
- PMC1690884
- OpenAlex
- W2112388934
- Cited by
- 377
- References
- 123
- Citations by year
- 2026: 1 · 2025: 5 · 2024: 4 · 2023: 4 · 2022: 3 · 2021: 4 · 2020: 5 · 2019: 8 · 2018: 4 · 2017: 10 · 2016: 7 · 2015: 16 · 2014: 20 · 2013: 20 · 2012: 22
- FWCI
- 36.13
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Proceedings of the Royal Society B Biological Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- American Museum of Natural History
- University of Washington
- Field Museum
- Burke Museum, University of Washington
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Plant Diversity and Evolution
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- Passeriformes, phylogenetic relationships, nuclear DNA sequences, suboscine passerines, oscine passerines, Alaudidae, biogeography, dispersal, family-level classification, paraphyly
- MeSH terms
- Animals, Base Sequence, Geography, Molecular Sequence Data, Phylogeny, Genetic Variation, Sequence Analysis, DNA, Evolution, Molecular, Songbirds
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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