A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
Open accessAbstract
Recent attempts to establish a molecular time-scale of eukaryote evolution failed to provide a congruent view on the timing of the origin and early diversification of eukaryotes. The major discrepancies in molecular time estimates are related to questions concerning the calibration of the tree. To limit these uncertainties, we used here as a source of calibration points the rich and continuous microfossil record of dinoflagellates, diatoms and coccolithophorids. We calibrated a small-subunit ribosomal RNA tree of eukaryotes with four maximum and 22 minimum time constraints. Using these multiple calibration points in a Bayesian relaxed molecular clock framework, we inferred that the early radiation of eukaryotes occurred near the Mesoproterozoic–Neoproterozoic boundary, about 1100 million years ago. Our results indicate that most Proterozoic fossils of possible eukaryotic origin cannot be confidently assigned to extant lineages and should therefore not be used as calibration points in molecular dating.
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The LECA estimate from the species tree analysis falls within published molecular clock estimates, placing LECA within a broad interval of approximately 1-2.4 Ga.
“The LECA estimate (1.93–1.84 Ga, 95% highest posterior density) from our species tree analysis falls within published molecular clock estimates, placing LECA within a broad interval ~1–2.4 Ga25–27,97–99 (Fig. 5A, C, Supplementary Fig. 16, Supplementary Data 10).”
From ATP synthase evolution on a cross-braced dated tree of life (2023) · cites this paper as [97]
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- Authors
- Berney, C., & Pawlowski, J.
- Affiliations
- University of Geneva (CH)
- Venue
- Proceedings of the Royal Society B: Biological Sciences
- Publisher
- The Royal Society
- Published
- 2006-04-20
- Volume
- 273
- Issue
- 1596
- Pages
- 1867-1872
- ISSN
- 0080-4649 (ISSN-L)
- 0962-8452
- 1471-2954
- PMC
- PMC1634798
- OpenAlex
- W2005201180
- Cited by
- 212
- References
- 45
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 10 · 2023: 8 · 2022: 8 · 2021: 13 · 2020: 15 · 2019: 10 · 2018: 15 · 2017: 10 · 2016: 16 · 2015: 13 · 2014: 14 · 2013: 15 · 2012: 12
- FWCI
- 3.13
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the Royal Society B Biological Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion, cc-by)
- Funders
- National Science Foundation
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (100415, 3100A0)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protist diversity and phylogeny
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Paleontology and Stratigraphy of Fossils
- Keywords
- eukaryotic evolution, fossil calibration, microfossils, dinoflagellates, diatoms, coccolithophores, small subunit rRNA, relaxed molecular clock, Bayesian phylogenetics, eukaryotic origin
- MeSH terms
- Chlorophyta, Rhodophyta, Amoeba, Animals, Eukaryotic Cells, Fossils, Fungi, Phylogeny, RNA, Ribosomal, Evolution, Molecular
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