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Desulfoplanes formicivorans gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a blackish meromictic lake, and emended description of the family Desulfomicrobiaceae
Abstract
A novel sulfate-reducing bacterium, designated strain Pf12B T, was isolated from sediment of meromictic Lake Harutori in Japan. Cells were vibroid (1.0 × 3.0–4.0 μm), motile and Gram-stain-negative. For growth, the optimum pH was 7.0–7.5 and the optimum temperature was 42–45 °C. Strain Pf12B T used sulfate, thiosulfate and sulfite as electron acceptors. The G+C content of the genomic DNA was 55.4 mol%. Major cellular fatty acids were C 16 : 0 and C 18 : 0. The strain was desulfoviridin-positive. Phylogenetic analysis based on the 16S rRNA gene revealed that the novel strain belonged to the order Desulfovibrionales in the class Deltaproteobacteria. The closest relative was Desulfomicrobium baculatum DSM 4028 T with which it shared 91 % 16S rRNA gene sequence similarity. On the basis of phylogenetic and phenotypic characterization, a novel species of a new genus belonging to the family Desulfomicrobiaceae is proposed,Desulfoplanes formicivorans gen. nov., sp. nov. The type strain of Desulfoplanes formicivorans is Pf12B T( = NBRC 110391 T= DSM 28890 T).
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“The highest H2S-producing FOR + PG cultures were dominated by two OTUs phylogenetically related to halotolerant sulfate-, thiosulfate- and sulfite-reducing species, Desulfovibrio senezii (94% identity) and Desulfoplanes formicivorans (98% identity), which use FOR and LAC as electron donors (Tsu et al., 1998; Watanabe et al., 2015).”
From Microbial Diversity in Sulfate-Reducing Marine Sediment Enrichment Cultures Associated with Anaerobic Biotransformation of Coastal Stockpiled Phosphogypsum (Sfax, Tunisia) (2017) · cites this paper as Watanabe et al., 2015
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Research works printed but not linked: 21
- Cord-Ruwisch, 1985, A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria, J Microbiol Methods, 4, 33, 10.1016/0167-7012(85)90005-3 · DOI
- Dahle, 2008, Microbial community structure analysis of produced water from a high-temperature North Sea oil-field, Antonie van Leeuwenhoek, 93, 37, 10.1007/s10482-007-9177-z · DOI
- Dias, 2008, Characterization of Desulfomicrobium salsuginis sp. nov. and Desulfomicrobium aestuarii sp. nov., two new sulfate-reducing bacteria isolated from the Adour estuary (French Atlantic coast) with specific mercury methylation potentials, Syst Appl Microbiol, 31, 30, 10.1016/j.syapm.2007.09.002 · DOI
- Engelkirk, 1992, Principles and Practice of Clinical Anaerobic Bacteriology
- Genthner, 2009, Genus I. Desulfomicrobium, vol. 3, 1181
- Harris, 2013, Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat, ISME J, 7, 50, 10.1038/ismej.2012.79 · DOI
- Katayama-Fujimura, 1984, Estimation of DNA base composition by high-performance liquid chromatography of its nuclease PI hydrolysate, Agric Biol Chem, 48, 3169
- Klein, 2001, Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes, J Bacteriol, 183, 6028, 10.1128/JB.183.20.6028-6035.2001 · DOI
- Kubo, 2014, Vertical distribution of major sulfate-reducing bacteria in a shallow eutrophic meromictic lake, Syst Appl Microbiol, 37, 510, 10.1016/j.syapm.2014.05.008 · DOI
- Kuever, 2006, Desulfothermus gen. nov. In List of New Names and Combinations Previously Effectively, but not Validly, Published, Validation List 107, Int J Syst Evol Microbiol, 56, 1, 10.1099/ijs.0.64188-0 · DOI
- Kuever, 2009, Order II. Desulfovibrionales ord. nov, vol. 3, 1181
- Lane, 1991, 16S/23S rRNA sequencing, 115
- Langendijk, 2001, Isolation of Desulfomicrobium orale sp. nov. and Desulfovibrio strain NY682, oral sulfate-reducing bacteria involved in human periodontal disease, Int J Syst Evol Microbiol, 51, 1035, 10.1099/00207713-51-3-1035 · DOI
- Larkin, 2007, clustal w clustal_x version 2.0, Bioinformatics, 23, 2947, 10.1093/bioinformatics/btm404 · DOI
- Meyer, 2007, Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene, Appl Environ Microbiol, 73, 7664, 10.1128/AEM.01272-07 · DOI
- Muyzer, 1996, Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA a new molecular approach to analyze the genetic diversity of mixed microbial communities, 3.4.4/1
- Rabus, 1993, Complete oxidation of toluene under strictly anoxic conditions by a new sulfate-reducing bacterium, Appl Environ Microbiol, 59, 1444, 10.1128/aem.59.5.1444-1451.1993 · DOI
- Santillano, 2010, Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria, Appl Environ Microbiol, 76, 5308, 10.1128/AEM.03004-09 · DOI
- Tamura, 2011, mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol Biol Evol, 28, 2731, 10.1093/molbev/msr121 · DOI
- Thevenieau, 2007, Desulfomicrobium thermophilum sp. nov., a novel thermophilic sulphate-reducing bacterium isolated from a terrestrial hot spring in Colombia, Extremophiles, 11, 295, 10.1007/s00792-006-0039-9 · DOI
- Widdel, 1992, Gram-negative mesophilic sulfate-reducing bacteria, vol. 4, 3352, 10.1007/978-1-4757-2191-1_21 · DOI
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Zouch, H., Karray, F., Armougom, F., Chifflet, S., Hirschler-Réa, A., Kharrat, H., Kamoun, L., Ben Hania, W., Ollivier, B., Sayadi, S., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01583 · Cited by 37
Metadata
- Authors
- Watanabe, M., Kojima, H., & Fukui, M.
- Affiliations
- The Institute of Low Temperature Science, Hokkaido University, Sapporo, Hokkaido, Japan
- Venue
- International Journal of Systematic and Evolutionary Microbiology
- Publisher
- Microbiology Society
- Published
- 2015-06-01
- Volume
- 65
- Issue
- Pt_6
- Pages
- 1902-1907
- ISSN
- 1466-5026
- 1466-5034
- Cited by
- 23
- References
- 0
- Language
- en
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