Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 62Genomics and Phylogenetic StudiesBacterial Genetics and BiotechnologyChromosomal and Genetic Variations

The DOI matches its Crossref record.

The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics.

Zeigler, Daniel R.·2011·Microbiology

Abstract

The genome sequence of Bacillus subtilis subsp. spizizenii W23 has been determined. The sequence strongly suggests that W23 is a direct descendant of B. subtilis ATCC 6633. W23 shares a 3.6 Mb core genome with the intensively studied model organism B. subtilis subsp. subtilis 168, and gene order within this core has been strongly conserved. Additionally, the W23 genome has 157 accessory (that is, non-core) genome segments that are not found in 168, while the 168 genome has 141 segments not found in W23. The distribution of sequences similar to these accessory segments among other genomes of the B. subtilis species complex shows that those sequences having entered into the phylogeny of the complex more recently tend to be larger and more AT-rich than those having entered earlier. A simple model can account for these observations, in which parasitic or symbiotic DNAs are transferred into the genome and then are reduced in size and modified in base composition during speciation.

Overview

Integrity signals

Registry

Crossref · 10.1099/mic.0.048520-0

Cites

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

No references could be resolved yet.

Research works printed but not linked: 55

  1. Albertini, 1999, The sequence of the trp operon of Bacillus subtilis 168 (trpC2) revisited, Microbiology, 145, 3319, 10.1099/00221287-145-12-3319 · DOI
  2. 10.1093/nar/25.17.3389 · DOI · Paper page
  3. Anagnostopoulos, 1961, Requirements for transformation in Bacillus subtilis, J Bacteriol, 81, 741, 10.1128/JB.81.5.741-746.1961 · DOI
  4. 10.4056/sigs.541628 · DOI
  5. 10.1073/pnas.0505835102 · DOI
  6. 10.1099/mic.0.027839-0 · DOI
  7. 10.1016/j.chembiol.2009.11.017 · DOI
  8. 10.1099/ijs.0.023267-0 · DOI
  9. 10.1016/j.chembiol.2010.07.017 · DOI
  10. 10.2307/2437147 · DOI
  11. Buxton, 1976, Prophage mutation causing heat inducibility of defective Bacillus subtilis bacteriophage PBSX, J Virol, 20, 22, 10.1128/JVI.20.1.22-28.1976 · DOI
  12. 10.1046/j.1365-2958.2003.03580.x · DOI
  13. 10.1016/0014-5793(78)80594-8 · DOI
  14. Cutting, 1990, Genetic Analysis, 27
  15. 10.1128/JB.00129-11 · DOI
  16. 10.1073/pnas.96.23.13294 · DOI
  17. 10.1128/JB.01351-10 · DOI
  18. Farmer, 1965, Transformable thymine-requiring mutant of Bacillus subtilis, J Bacteriol, 89, 262, 10.1128/JB.89.1.262-263.1965 · DOI
  19. Felsenstein, 1989, phylip – phylogeny inference package (version 3.2), Cladistics, 5, 164
  20. 10.1038/nrmicro1204 · DOI
  21. 10.1080/10635150390235520 · DOI
  22. Hemphill, 1975, Bacteriophages of Bacillus subtilis, Bacteriol Rev, 39, 257, 10.1128/MMBR.39.3.257-315.1975 · DOI
  23. Jansen, 1944, Subtilin – an antibacterial product of Bacillus subtilis. Culturing conditions and properties, Arch Biochem Biophys, 4, 297
  24. 10.1016/0022-2836(72)90192-1 · DOI
  25. Kellerman, 1912, The fermentation of cellulose, Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 2, 34, 485
  26. 10.1093/nar/gkn668 · DOI
  27. 10.1016/B978-0-12-384890-1.00002-9 · DOI
  28. 10.1186/1471-2164-8-321 · DOI
  29. 10.1007/PL00006158 · DOI
  30. 10.1073/pnas.95.16.9413 · DOI
  31. 10.1073/pnas.95.4.1692 · DOI
  32. Lazarevic, 2002, Comparison of ribitol and glycerol teichoic acid genes in Bacillus subtilis W23 and 168: identical function, similar divergent organization, but different regulation, Microbiology, 148, 815, 10.1099/00221287-148-3-815 · DOI
  33. 10.1186/1471-2105-11-579 · DOI
  34. 10.1099/mic.0.28021-0 · DOI
  35. 10.1099/00207713-49-3-1211 · DOI
  36. 10.1073/pnas.47.1.52 · DOI
  37. 10.1186/1471-2164-7-74 · DOI
  38. 10.1128/AEM.71.9.5511-5522.2005 · DOI
  39. 10.1016/S0168-9525(02)02690-2 · DOI
  40. 10.1099/ijs.0.009126-0 · DOI
  41. 10.1021/bi00893a001 · DOI
  42. 10.1016/S0167-7012(02)00036-2 · DOI
  43. Smith, 1952, Aerobic Sporeforming Bacteria.
  44. 10.1073/pnas.44.10.1072 · DOI
  45. Spizizen, 1984, Citation classic – transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate, Curr Contents Life Sci, 19, 15
  46. 10.1371/journal.pgen.1000139 · DOI
  47. 10.1099/13500872-141-2-323 · DOI
  48. Thorne, 1962, Transduction in Bacillus subtilis, J Bacteriol, 83, 106, 10.1128/JB.83.1.106-111.1962 · DOI
  49. 10.1371/journal.pgen.1000344 · DOI
  50. Widom, 1988, Instability of rRNA operons in Bacillus subtilis, J Bacteriol, 170, 605, 10.1128/JB.170.2.605-610.1988 · DOI
  51. 10.1016/0378-1119(90)90344-Q · DOI
  52. 10.1038/nrmicro2382 · DOI
  53. 10.1099/ijs.0.02713-0 · DOI
  54. 10.1128/JB.00722-08 · DOI
  55. 10.1101/gr.074492.107 · DOI

Cited by

See all 62

Metadata

Authors
Zeigler, D. R.
Affiliations
The Ohio State University (US)
Corresponding author
Zeigler, Daniel R.
Venue
Microbiology
Published
2011-07-01
Volume
157
Issue
7
Pages
2033-2041
ISSN
  • 1350-0872 (ISSN-L)
  • 1465-2080
OpenAlex
W2016722831
Cited by
62
References
0
Citations by year
2026: 2 · 2025: 1 · 2024: 1 · 2023: 3 · 2022: 4 · 2021: 3 · 2020: 7 · 2019: 5 · 2018: 1 · 2017: 5 · 2016: 6 · 2015: 7 · 2014: 6 · 2013: 8 · 2012: 3
FWCI
2.20
Type
journal article
Language
en
Open access
closed
Locations
  • Microbiology (publishedVersion)
  • PubMed (publishedVersion)
Funders
National Sciences Foundation (0234214)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
Keywords
genome sequence, speciation, core genome, accessory genome, gene order conservation, horizontal gene transfer, A+T content, genome evolution, Bacillus subtilis 168
MeSH terms
Bacillus subtilis, Base Sequence, Chromosome Mapping, DNA, Bacterial, Genes, Bacterial, Molecular Sequence Data, Phylogeny, Genetic Variation, Sequence Alignment, Genome, Bacterial, Sequence Analysis, DNA, Gene Transfer, Horizontal, Genetic Speciation

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics. https://app.cochat.ai/papers/10.1099/mic.0.048520-0
The paper
Zeigler, D. R. (2011). The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics. Microbiology. https://doi.org/10.1099/mic.0.048520-0

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.