PreprintCited by 51Telomeres, Telomerase, and SenescenceDNA Repair MechanismsDNA and Nucleic Acid Chemistry

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Human POT1 Prevents Severe Telomere Instability Induced by Homology Directed DNA Repair

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Preprint — published as 10.15252/embj.2020104500 · Paper page

Abstract

SUMMARY: The evolutionarily conserved POT1 protein binds single stranded G-rich telomeric DNA and has been implicated in contributing to telomeric DNA maintenance and the suppression of DNA damage checkpoint signaling. Here, we explore human POT1 function through genetics and proteomics discovering that the complete absence of POT1 leads to severe telomere maintenance defects that had not been anticipated from previous depletion studies. Conditional deletion of POT1 in HEK293E cells gives rise to rapid telomere elongation and length heterogeneity, branched telomeric DNA structures, telomeric R-loops and telomere fragility. We determine the telomeric proteome upon POT1-loss implementing an improved telomeric chromatin isolation protocol. We identify a large set of proteins involved in nucleic acid metabolism that engage with telomeres upon POT1-loss. Inactivation of the homology directed repair machinery suppresses POT1-loss mediated telomeric DNA defects. Our results unravel as major function of human POT1 the suppression of telomere instability induced by homology directed repair.

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Research works printed but not linked: 53

  1. 10.1038/ncomms6220 · DOI
  2. 10.1126/science.1147182 · DOI
  3. 10.1126/science.1060036 · DOI · Paper page
  4. 10.2307/2346101 · DOI
  5. 10.1038/emboj.2011.280 · DOI
  6. 2017, Structural insights into POT1-TPP1 interaction and POT1 C-terminal mutations in human cancer, Nat Commun, 8, 14929, 10.1038/ncomms14929 · DOI
  7. 2008, MaxQuant enables high peptide identification rates, individualized p, p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol, 26, 1367
  8. 10.1007/s13361-011-0142-8 · DOI
  9. 10.1016/j.cell.2013.09.048 · DOI · Paper page
  10. 10.1016/j.ymeth.2016.08.004 · DOI
  11. 2011, Shotgun proteomics: a relative quantitative approach using Off-Gel electrophoresis and LC-MS/MS, Methods Mol. Biol, 681, 459, 10.1007/978-1-60761-913-0_27 · DOI
  12. 10.1016/j.cell.2017.06.006 · DOI
  13. 10.1038/ncomms3848 · DOI
  14. 10.1038/nbt.1587 · DOI
  15. 2017, The C-Circle Assay for alternative-lengthening-of-telomeres activity, Methods, 114, 74, 10.1016/j.ymeth.2016.08.016 · DOI
  16. 10.1038/sj.emboj.7600733 · DOI · Paper page
  17. 10.1016/j.cell.2006.04.044 · DOI · Paper page
  18. 2018, Benchmarking common quantification strategies for large-scale phosphoproteomics, Nat Commun, 9, 1045, 10.1038/s41467-018-03309-6 · DOI
  19. 10.1128/MCB.25.2.808-818.2005 · DOI
  20. 10.1093/nar/25.13.2595 · DOI
  21. 2009, TRF2 functions as a protein hub and regulates telomere maintenance by recognizing specific peptide motifs, Nature Structural & Molecular Biology, 16, 372, 10.1038/nsmb.1575 · DOI
  22. Kim, H. , Li, F. , He, Q. , Deng, T. , Xu, J. , Jin, F. , Coarfa, C. , Putluri, N. , Liu, D. , and Songyang, Z . (2017). Systematic analysis of human telomeric dysfunction using inducible telosome/shelterin CRISPR/Cas9 knockout cells. Cell Discovery 3. · DOI
  23. 10.1146/annurev-genet-032918-021921 · DOI · Paper page
  24. 10.1038/emboj.2009.409 · DOI
  25. 10.1038/nrm.2016.43 · DOI
  26. 10.1038/nsmb867 · DOI
  27. 10.1038/ncomms5767 · DOI
  28. 10.1074/jbc.M409293200 · DOI · Paper page
  29. 10.1038/nature01688 · DOI
  30. 10.1016/j.ymeth.2016.08.003 · DOI
  31. 10.1021/ac502040v · DOI · Paper page
  32. Min, J. , Wright, W.E. , and Shay, J.W . (2017). Alternative Lengthening of Telomeres Mediated by Mitotic DNA Synthesis Engages Break-Induced Replication Processes. Molecular and Cellular Biology 37. · DOI
  33. 10.1126/science.1154819 · DOI
  34. 10.1128/MCB.00603-08 · DOI
  35. 10.1021/acs.jproteome.8b00016 · DOI
  36. 10.1128/MCB.01352-08 · DOI
  37. 10.1038/emboj.2013.217 · DOI
  38. 10.1016/j.celrep.2016.05.008 · DOI
  39. 10.1093/nar/gkq580 · DOI
  40. 10.1021/pr500880b · DOI
  41. 10.1038/ncomms14928 · DOI
  42. 10.1021/pr400098r · DOI
  43. 10.1016/j.cell.2009.06.021 · DOI · Paper page
  44. 2019, FANCM limits ALT activity by restricting telomeric replication stress induced by deregulated BLM and R-loops, Nat Commun, 10, 2253, 10.1038/s41467-019-10179-z · DOI
  45. 10.1093/nar/gky1131 · DOI · Paper page
  46. 10.1016/j.molcel.2011.08.043 · DOI
  47. Vančevska, A. , Pfeiffer, V. , Feretzaki, M. , Ahmed, W. , and Lingner, J. (2019). SMCHD1 Promotes ATM-dependent DNA Damage Signaling and Repair of Uncapped Telomeres. BioRxiv. · DOI
  48. 10.1016/j.cell.2004.10.011 · DOI
  49. 10.1016/j.cell.2006.05.037 · DOI · Paper page
  50. 2007, Detecting protein–protein interactions by far western blotting, Nature Protocols, 2, 3278, 10.1038/nprot.2007.459 · DOI
  51. 10.1074/jbc.M409047200 · DOI
  52. 1999, Telomerase-negative immortalized human cells contain a novel type of promyelocytic leukemia (PML) body, Cancer Res, 59, 4175
  53. 10.1016/j.cell.2012.07.012 · DOI

Metadata

Authors
Glousker, G., Briod, A.-S., Quadroni, M., & Lingner, J.
Affiliations
  • École Polytechnique Fédérale de Lausanne (CH)
  • University of Lausanne (CH)
Corresponding author
Lingner, Joachim
Venue
The EMBO Journal
Publisher
openRxiv
Published
2020-01-20
Volume
39
Issue
23
Pages
e104500-e104500
ISSN
0261-4189 (ISSN-L)
OpenAlex
W3093230859
Cited by
51
References
1
Citations by year
2026: 5 · 2025: 9 · 2024: 10 · 2023: 8 · 2022: 8 · 2021: 10 · 2020: 1
FWCI
4.06
Type
journal article
Language
en
Open access
Locations
  • The EMBO Journal (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
  • Infoscience (Ecole Polytechnique Fédérale de Lausanne) (submittedVersion, cc-by-nc-nd)
  • IRIS (submittedVersion)
  • SERVAL (Université de Lausanne) (submittedVersion)
Funders
  • National Science Foundation
  • University of Texas Southwestern Medical Center
  • European Commission
  • École Polytechnique Fédérale de Lausanne
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (184718, 182880, 310030)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Telomeres, Telomerase, and Senescence
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
Keywords
POT1, shelterin, telomere maintenance, telomere instability, homology-directed repair, telomeric DNA, telomere fragility, conditional gene deletion, DNA damage checkpoint, nucleic acid metabolism
MeSH terms
Shelterin Complex, Cell Cycle, DNA, DNA, Single-Stranded, HeLa Cells, Humans, Phenotype, Telomere, Proteome, Telomere-Binding Proteins, Gene Knockout Techniques, HEK293 Cells, Transcriptome, Recombinational DNA Repair

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