The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Phosphorylation controls RNA binding and transcription by the influenza virus polymerase
Open accessPreprint — published as 10.1371/journal.ppat.1008841 · Paper page
Abstract
The influenza virus polymerase transcribes and replicates the viral genome. The proper timing and balance of polymerase activity is important for successful replication. We previously showed that phosphorylation regulates genome replication by controlling assembly of the replication machinery (Mondal, et al. 2017). However, it remained unclear whether phosphorylation directly regulated polymerase activity. Here we identified polymerase phosphosites that control its function. Mutating phosphosites in the catalytic subunit PB1 altered polymerase activity and virus replication. Biochemical analyses revealed phosphorylation events that disrupted global polymerase function by blocking the NTP entry channel or preventing RNA binding. We also identified a regulatory site that split polymerase function by specifically suppressing transcription. These experiments show that host kinases phospho-regulate viral RNA synthesis directly by modulating polymerase activity and indirectly by controlling assembly of replication machinery. Further, they suggest polymerase phosphorylation may bias replication versus transcription at discrete times or locations during the infectious cycle.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Global quantification of mammalian gene expression control
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566
Flagged first, then by citations
Research works printed but not linked: 47
- 10.1126/science.1228172 · DOI
- 10.1016/j.celrep.2018.08.012 · DOI
- 10.1128/JVI.03257-15 · DOI
- 10.1073/pnas.75.10.4886 · DOI
- 2001, Respiratory Syncytial Virus M2-1 Protein Requires Phosphorylation for Efficient Function and Binds Viral RNA during Infection, J. Virol, 75, 12188 LP, 10.1128/JVI.75.24.12188-12197.2001 · DOI
- 10.1128/JVI.02761-12 · DOI
- 10.1021/pr101065j · DOI
- 10.1074/mcp.M113.031591 · DOI · Paper page
- 2018, CDC25B promotes influenza A virus replication by regulating the phosphorylation of nucleoprotein, Virology, 525, 40, 10.1016/j.virol.2018.09.005 · DOI
- 2018, Flu’s cues: Exploiting host post-translational modifications to direct the influenza virus replication cycle, PLoS Pathog, 14, e1007205, 10.1371/journal.ppat.1007205 · DOI
- 10.1128/JVI.79.13.8669-8674.2005 · DOI
- 10.1038/nmeth1019 · DOI · Paper page
- 10.1128/JVI.79.9.5812-5818.2005 · DOI
- Fodor, E. , and te Velthuis, A.J.W. (2019). Structure and Function of the Influenza Virus Transcription and Replication Machinery. Cold Spring Harb. Perspect. Med. · DOI
- 10.1016/0042-6822(77)90179-9 · DOI
- 10.1016/0092-8674(81)90208-7 · DOI
- Hutchinson, E.C. , Denham, E.M. , Thomas, B. , Trudgian, D.C. , Hester, S.S. , Ridlova, G. , York, A. , Turrell, L. , and Fodor, E. (2012). Mapping the Phosphoproteome of Influenza A and B Viruses by Mass Spectrometry. PLoS Pathog. 8. · DOI · Paper page
- 10.1038/296366a0 · DOI
- 2008, A cluster of conserved basic amino acids near the C-terminus of the PB1 subunit of the influenza virus RNA polymerase is involved in the regulation of viral transcription, Virology, 373, 202, 10.1016/j.virol.2007.11.030 · DOI
- 10.1128/JVI.00508-14 · DOI
- 10.1128/JVI.01829-16 · DOI
- 10.1093/emboj/16.6.1248 · DOI
- 10.1038/s41594-019-0232-z · DOI
- 2019, EPS8 Facilitates Uncoating of Influenza A Virus, Cell Rep, 29, 2175, 10.1016/j.celrep.2019.10.064 · DOI
- 10.1016/j.chom.2008.06.007 · DOI
- 10.1126/science.1227270 · DOI
- 10.1128/JVI.02384-13 · DOI
- 10.1371/journal.ppat.1004826 · DOI
- 10.7554/eLife.26910 · DOI
- 10.1073/pnas.0505587102 · DOI
- Perez, J.T. , Varble, A. , Sachidanandam, R. , Zlatev, I. , Manoharan, M. , García-Sastre, A. , and TenOever, B.R. (2010). Influenza A virus-generated small RNAs regulate the switch from transcription to replication. Proc. Natl. Acad. Sci. U. S. A. · DOI
- 10.1038/nature14008 · DOI
- 10.1073/pnas.76.4.1618 · DOI
- 10.1016/0042-6822(69)90045-2 · DOI
- 10.1038/nature14009 · DOI
- 2017, An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase, Nucleic Acids Res, 45, 3353
- 10.1371/journal.ppat.1006920 · DOI
- 10.1099/vir.0.009639-0 · DOI
- 10.1016/j.virol.2005.06.040 · DOI
- 10.1074/jbc.M302016200 · DOI
- 2018, Phosphorylated VP30 of Marburg Virus Is a Repressor of Transcription, J. Virol, 92, e00426
- 10.1038/ncomms2514 · DOI
- 10.1128/JVI.78.17.9568-9572.2004 · DOI
- 10.1128/JVI.00695-11 · DOI
- Weber, A. , Dam, S. , Saul, V. V. , Kuznetsova, I. , Müller, C. , Fritz-Wolf, K. , Becker, K. , Linne, U. , Gu, H. , Stokes, M.P. , et al. (2019). Phosphoproteome Analysis of Cells Infected with Adapted and Nonadapted Influenza A Virus Reveals Novel Pro- and Antiviral Signaling Networks. J. Virol. 93. · DOI
- 1981, Expression of influenza A virus internal antigens on the surface of infected P815 cells, J. Immunol, 126, 1814, 10.4049/jimmunol.126.5.1814 · DOI
- 10.1073/pnas.1315068110 · DOI
Metadata
- Authors
- Dawson, A. R., Wilson, G. M., Freiberger, E. C., Mondal, A., Coon, J. J., & Mehle, A.
- Affiliations
- University of Wisconsin–Madison (US)
- Corresponding author
- Mehle, Andrew
- ORCID
- Venue
- PLoS Pathogens
- Publisher
- openRxiv
- Published
- 2020-02-10
- Volume
- 16
- Issue
- 9
- Pages
- e1008841-e1008841
- ISSN
- 1553-7366 (ISSN-L)
- PMC
- PMC7494117
- OpenAlex
- W3083493094
- Cited by
- 32
- References
- 1
- Citations by year
- 2026: 4 · 2025: 9 · 2024: 4 · 2023: 9 · 2022: 3 · 2021: 3
- FWCI
- 2.69
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- PLoS Pathogens (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Burroughs Wellcome Fund
- National Institutes of Health
- National Institute of General Medical Sciences (T32GM008349, R35GM118110)
- National Institute of Allergy and Infectious Diseases (R01AI125271, T32AI078985)
- Topics
- Health Sciences › Medicine › Epidemiology › Influenza Virus Research Studies
- Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Viral Infectious Diseases and Gene Expression in Insects
- Keywords
- protein phosphorylation, phosphosites, RNA binding, viral transcription, viral genome replication
- MeSH terms
- A549 Cells, Animals, Dogs, Humans, Influenza A virus, Phosphorylation, RNA, Viral, Transcription, Genetic, Viral Proteins, Virus Replication, HEK293 Cells, Madin Darby Canine Kidney Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review