PreprintCited by 5Bacterial Genetics and BiotechnologyEnzyme Structure and FunctionMetalloenzymes and iron-sulfur proteins

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

The structure of Vibrio cholerae FeoC reveals conservation of the helix-turn-helix motif but not the cluster-binding domain

Open access
Brown, Janae B., Lee, Mark A., Smith, Aaron T.·2022·JBIC Journal of Biological Inorganic Chemistry

Preprint — published as 10.1007/s00775-022-01945-4 · Paper page

Abstract

Most pathogenic bacteria require ferrous iron (Fe 2+ ) in order to sustain infection within hosts. The ferrous iron transport (Feo) system is the most highly-conserved prokaryotic transporter of Fe 2+ , but its mechanism remains to be fully characterized. Most Feo systems are composed of two proteins: FeoA, a soluble SH3-like accessory protein and FeoB, a membrane protein that translocates Fe 2+ across a lipid bilayer. Some bacterial feo operons encode FeoC, a third soluble, winged-helix protein that remains enigmatic in function. We previously demonstrated that select FeoC proteins bind O 2 -sensitive [4Fe-4S] clusters via Cys residues, leading to the proposal that some FeoCs could sense O 2 to regulate Fe 2+ transport. However, not all FeoCs conserve these Cys residues, and FeoC from the causative agent of cholera ( Vibrio cholerae ) notably lacks any Cys residues, precluding cluster binding. In this work, we determined the NMR structure of Vc FeoC, which is monomeric and conserves the helix-turn-helix domain seen in other FeoCs. In contrast, however, the structure of Vc FeoC reveals a truncated winged β-sheet in which the cluster-binding domain is notably absent. To test the interactions of Vc FeoC with Vc FeoB, we used NMR to demonstrate that these proteins interact in a 1:1 stoichiometry with a K d of ca . 25 μM. Finally, using homology modeling, we predicted the structure of Vc NFeoB and used docking to identify an interaction site with Vc FeoC, which is confirmed by NMR spectroscopy. These findings provide the first atomic-level structure of Vc FeoC and contribute to a better understanding of its role vis-à-vis FeoB.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2022.02.26.482101

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 51

  1. 10.1016/j.bbamem.2007.07.026 · DOI
  2. 10.1016/S0168-6445(03)00055-X · DOI · Paper page
  3. 10.1111/j.1574-6976.1993.tb00026.x · DOI
  4. 10.1371/journal.ppat.1000949 · DOI · Paper page
  5. 2021, Biochemistry, 60, 3277, 10.1021/acs.biochem.1c00586 · DOI · Paper page
  6. 10.1128/MMBR.00012-07 · DOI · Paper page
  7. 10.1016/j.cbpa.2013.12.014 · DOI · Paper page
  8. 10.1128/JB.01121-12 · DOI
  9. 10.1016/j.jmb.2007.11.027 · DOI
  10. 10.1128/JB.01228-12 · DOI
  11. 10.1007/s10858-012-9633-6 · DOI
  12. 10.1128/JB.00738-13 · DOI
  13. 10.1099/mic.0.2008/022772-0 · DOI
  14. 10.1007/s10534-006-0003-2 · DOI
  15. 10.1073/pnas.0500908102 · DOI · Paper page
  16. 10.1128/JB.00687-13 · DOI
  17. 2019, Biochemistry, 58, 4935, 10.1021/acs.biochem.9b00745 · DOI
  18. 10.1042/BJ20140169 · DOI
  19. 10.1128/JB.186.23.8018-8025.2004 · DOI
  20. 10.1128/JB.00930-15 · DOI
  21. 10.1039/c8mt00097b · DOI · Paper page
  22. 10.1021/ja00042a003 · DOI
  23. 10.1016/0022-2364(92)90169-8 · DOI
  24. 10.1016/0022-2364(90)90333-5 · DOI
  25. 10.1016/0022-2364(92)90252-3 · DOI
  26. 10.1007/BF00197809 · DOI
  27. 10.1007/s10858-016-0049-6 · DOI
  28. 10.1007/BF00404272 · DOI
  29. 10.1385/1-59259-809-9:313 · DOI
  30. 10.1385/1-59259-809-9:353 · DOI
  31. 10.1007/s10858-009-9333-z · DOI
  32. M. Mirdita , K. Schütze , Y. Moriwaki , L. Heo , S. Ovchinnikov and M. Steinegger (2021) BioRxiv, doi https://doi.org/10.1101/2021.08.15.456425 · DOI · Paper page
  33. 10.1038/nprot.2016.169 · DOI
  34. 2013, Proteins: Struc, Funct, Bioinf, 81, 2159, 10.1002/prot.24403 · DOI
  35. 2019, Proteins, 87, 897, 10.1002/prot.25755 · DOI
  36. A. E. Sestok , J. B. Brown , J. O. Obi , S. M. O’Sullivan , E. D. Garcin , D. J. Deredge and A. T. Smith (2021) BioRxiv, doi https://doi.org/10.1101/2021.09.29.462438 · DOI
  37. V. Breukels , A. Konijnberg , S. M. Nabuurs , J. F. Doreleijers , N. V. Kovalevskaya and G. W. Vuister (2011) Current protocols in protein science. John Wiley & Sons, Inc, Hoboken, NJ, pp. 17.15.11–17.15.44 · DOI
  38. 10.1016/0022-2836(79)90548-5 · DOI
  39. 10.1007/BF00175245 · DOI
  40. 1994, J Biomol NMR, 4, 455
  41. 10.1007/s10858-012-9602-0 · DOI
  42. L. Serrano and A. R. Fersht (1989) Nature 342 · DOI
  43. 10.1021/bi00449a003 · DOI
  44. 10.1126/science.2377896 · DOI
  45. 10.1021/ja00158a070 · DOI
  46. 10.1021/bi00441a004 · DOI
  47. 10.1006/jmrb.1993.1035 · DOI
  48. 10.1002/prot.24329 · DOI
  49. 10.1016/j.jmb.2016.03.005 · DOI
  50. 10.1128/JB.00343-13 · DOI
  51. 10.1128/JB.01826-14 · DOI

Metadata

Authors
Brown, J. B., Lee, M. A., & Smith, A. T.
Affiliations
University of Maryland, Baltimore County (US)
Corresponding author
Smith, Aaron T.
Venue
JBIC Journal of Biological Inorganic Chemistry
Publisher
openRxiv
Published
2022-02-26
Volume
27
Issue
4-5
Pages
485-495
ISSN
0949-8257 (ISSN-L)
OpenAlex
W4284883619
Cited by
5
References
1
Citations by year
2026: 1 · 2024: 2 · 2022: 2
FWCI
0.60
Type
journal article
Language
en
Open access
Licence
cc-by-nc-nd
Locations
  • JBIC Journal of Biological Inorganic Chemistry (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
  • Maryland Shared Open Access Repository (USMAI Consortium) (submittedVersion, cc-by-nc-nd)
  • Digital Repository at the University of Maryland (University of Maryland College Park)
Funders
  • National Science Foundation (CAREER, 1844624)
  • University of Maryland, Baltimore County
  • National Institutes of Health (GM133497, GM066706)
  • National Institute of General Medical Sciences (GM133497, T32GM066706, GM066706, R35GM133497)
  • Division of Chemistry (CAREER 1844624)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Metalloenzymes and iron-sulfur proteins
Keywords
Vibrio cholerae, ferrous iron transport, helix-turn-helix motif, FeoB, protein structure, oxygen sensing, iron acquisition, protein-protein interaction
MeSH terms
Bacterial Proteins, Iron, Operon, Vibrio cholerae, Gene Expression Regulation, Bacterial, Helix-Turn-Helix Motifs

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review