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Pathway elucidation and microbial synthesis of proaporphine and bis-benzylisoquinoline alkaloids from sacred lotus ( Nelumbo nucifera )
Open accessPreprint — published as 10.1016/j.ymben.2023.03.010 · Paper page
Abstract
Sacred lotus ( Nelumbo nucifera ) has been utilized as a food, medicine, and spiritual symbol for nearly 3,000 years. The medicinal properties of lotus are largely attributed to its unique profile of benzylisoquinoline alkaloids (BIAs), which includes potential anti-cancer, anti-malarial and anti-arrhythmic compounds. BIA biosynthesis in sacred lotus differs markedly from that of opium poppy and other members of the Ranunculales, most notably in an abundance of BIAs possessing the ( R )-stereochemical configuration and the absence of reticuline, a major branchpoint intermediate in most BIA producers. Owing to these unique metabolic features and the pharmacological potential of lotus, we set out to elucidate the BIA biosynthesis network in N. nucifera . Here we show that lotus CYP80G ( Nn CYP80G) and a superior ortholog from Peruvian nutmeg ( Laurelia sempervirens ; Ls CYP80G) stereospecifically convert ( R )- N -methylcoclaurine to the proaporphine alkaloid glaziovine, which is subsequently methylated to pronuciferine, the presumed precursor to nuciferine. While sacred lotus employs a dedicated ( R )-route to aporphine alkaloids from ( R )-norcoclaurine, we implemented an artificial stereochemical inversion approach to flip the stereochemistry of the core BIA pathway. Exploiting the unique substrate specificity of dehydroreticuline synthase from common poppy ( Papaver rhoeas ) and pairing it with dehydroreticuline reductase enabled de novo synthesis of ( R )- N -methylcoclaurine from ( S )- norcoclaurine and its subsequent conversion to pronuciferine. We leveraged our stereochemical inversion approach to also elucidate the role of Nn CYP80A in sacred lotus metabolism, which we show catalyzes the stereospecific formation of the bis-BIA nelumboferine. Screening our collection of 66 plant O -methyltransferases enabled conversion of nelumboferine to liensinine, a potential anti-cancer bis-BIA from sacred lotus. Our work highlights the unique benzylisoquinoline metabolism of N. nucifera and enables the targeted overproduction of potential lotus pharmaceuticals using engineered microbial systems.
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Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 50
- 10.1038/s41597-022-01624-8 · DOI
- 10.1002/yea.1705 · DOI
- Barton, D. , Bhakuni, D. , Chapman, G. , Kirby, G ., 1967. Phenol oxidation and biosynthesis. Part XV. The biosynthesis of roemerine, anonaine, and mecambrine. Journal of the Chemical Society C: Organic. 2134–2140. · DOI
- 2018, An LC-ESI- MS/MS method for the simultaneous determination of pronuciferine and roemerine in some Papaver species, J. Chromatogr. B, 1096, 223, 10.1016/j.jchromb.2018.08.020 · DOI
- 2022, The MyLO CRISPR-Cas9 toolkit: a markerless yeast localization and overexpression CRISPR-Cas9 toolkit, G3, 12, jkac154, 10.1093/g3journal/jkac154 · DOI
- 2022, Lotus (Nelumbo nucifera Gaertn.) and its bioactive phytocompounds: A tribute to cancer prevention and intervention, Cancers, 14, 529, 10.3390/cancers14030529 · DOI
- 2018, A highly characterized synthetic landing pad system for precise multicopy gene integration in yeast, ACS Synthetic Biology, 7, 2675, 10.1021/acssynbio.8b00339 · DOI
- 2022, Green extraction-assisted pseudo-targeted profile of alkaloids in Lotus seed epicarp based on UPLC-QTOF MS with IDA, Foods, 11, 1056, 10.3390/foods11071056 · DOI
- 10.1016/j.chroma.2013.06.002 · DOI
- 2015, Stereochemical inversion of (S)-reticuline by a cytochrome P450 fusion in opium poppy, Nature Chemical Biology, 11, 728, 10.1038/nchembio.1879 · DOI
- 10.1371/journal.pone.0124459 · DOI
- 10.1007/s11248-006-9040-4 · DOI
- 10.1126/science.aac9373 · DOI
- 2021, Peroxisome compartmentalization of a toxic enzyme improves alkaloid production, Nature Chemical Biology, 17, 96, 10.1038/s41589-020-00668-4 · DOI
- Haynes, L. , Stuart, K. , Barton, D. , Bhakuni, D. , Kirby, G ., 1965. On the biosynthesis of crotonosine. Chemical Communications (London). 141–142. · DOI
- 10.1038/s41392-021-00704-2 · DOI
- 2022, Biosynthesis of strychnine, Nature, 607, 617, 10.1038/s41586-022-04950-4 · DOI
- Horwitz, A. A. , Walter, J. M. , Schubert, M. G. , Kung, S. H. , Hawkins, K. , Platt, D. M. , Hernday, A. D. , Mahatdejkul-Meadows, T. , Szeto, W. , Chandran, S. S ., 2015. Efficient multiplexed integration of synergistic alleles and metabolic pathways in yeasts via CRISPR-Cas. Cell Systems. 88–96. · DOI
- 2011, Bisbenzylisoquinoline alkaloids from Nelumbo nucifera, Chem. Pharm. Bull, 59, 947, 10.1248/cpb.59.947 · DOI
- 10.1093/rheumatology/keq164 · DOI
- 2005, Anti-HIV benzylisoquinoline alkaloids and flavonoids from the leaves of Nelumbo nucifera, and structure–activity correlations with related alkaloids, Bioorganic & Medicinal Chemistry, 13, 443, 10.1016/j.bmc.2004.10.020 · DOI
- 10.1093/nar/gkx1268 · DOI
- 2021, Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera, Scientific Data, 8, 1
- 10.1002/pca.2517 · DOI
- 2018, Benzylisoquinoline alkaloids biosynthesis in sacred lotus, Molecules, 23, 2899, 10.3390/molecules23112899 · DOI
- 10.1074/jbc.RA119.011547 · DOI
- 10.1016/j.ymben.2012.01.006 · DOI
- 2019, Molecular origins of functional diversity in benzylisoquinoline alkaloid methyltransferases, Frontiers in Plant Science, 10, 1058, 10.3389/fpls.2019.01058 · DOI
- 2013, Cytochrome P450 genes from the sacred lotus genome, Tropical plant biology, 6, 138, 10.1007/s12042-013-9119-z · DOI
- 2020, Discovery and engineering of colchicine alkaloid biosynthesis, Nature, 584, 148, 10.1038/s41586-020-2546-8 · DOI
- 1986, Alkaloids from embryo of the seed of Nelumbo nucifera, Journal of Natural Products, 49, 547, 10.1021/np50045a036 · DOI
- 2013, Synthesis and pharmacological activity of alkaloids from embryo of lotus, Nelumbo nucifera, Chemical and Pharmaceutical Bulletin, 61, 59, 10.1248/cpb.c12-00820 · DOI
- 10.1073/pnas.2112520118 · DOI
- 10.1002/adsc.201200641 · DOI
- 10.1093/pcp/pcx093 · DOI
- Pyne, M. , Narcross, L. , Fossati, E. , Bourgeois, L. , Burton, E. , Gold, N. , Martin, V ., 2016. Reconstituting plant secondary metabolism in Saccharomyces cerevisiae for production of high-value benzylisoquinoline alkaloids. Methods in enzymology. · DOI
- 10.1038/s41467-019-13889-6 · DOI · Paper page
- 2022, Microbial synthesis of natural, semisynthetic, and new-to-nature tetrahydroisoquinoline alkaloids, Current Opinion in Green and Sustainable Chemistry, 33, 100561, 10.1016/j.cogsc.2021.100561 · DOI
- 2016, A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae, Nucleic Acids Research, 45, 496
- 10.7554/eLife.03703 · DOI
- 10.1093/nar/gkn991 · DOI
- 10.1186/s13059-016-0900-9 · DOI
- 1968, Proaporphine alkaloids, Chemical Reviews, 68, 321, 10.1021/cr60253a004 · DOI
- 10.1093/NAR/GKAB1061 · DOI · Paper page
- 10.1126/science.aab1852 · DOI
- 2018, Isolation and identification of a tribenzylisoquinoline alkaloid from Nelumbo nucifera Gaertn, a novel potential smooth muscle relaxant, Fitoterapia, 124, 58, 10.1016/j.fitote.2017.10.020 · DOI
- 2017, Digital gene expression analysis provides insight into the transcript profile of the genes involved in aporphine alkaloid biosynthesis in lotus (Nelumbo nucifera), Frontiers in Plant Science, 8, 80
- 2022, Identification and quantification of oligomeric proanthocyanidins, alkaloids, and flavonoids in lotus seeds: A potentially rich source of bioactive compounds, Food Chemistry, 379, 132124, 10.1016/j.foodchem.2022.132124 · DOI
- 2007, Fragmentation study on the phenolic alkaloid neferine and its analogues with anti-HIV activities by electrospray ionization tandem mass spectrometry with hydrogen/deuterium exchange and its application for rapid identification of in vitro microsomal metabolites of neferine, Rapid Communications in Mass Spectrometry: An International Journal Devoted to the Rapid Dissemination of Up- to-the-Minute Research in Mass Spectrometry, 21, 2120, 10.1002/rcm.3070 · DOI
- 10.1080/15548627.2015.1056970 · DOI
Metadata
- Authors
- Pyne, M. E., Gold, N. D., & Martin, V. J. J.
- Affiliations
- Concordia University (CA)
- Corresponding author
- Pyne, Michael E.
- Martin, Vincent J. J.
- Venue
- Metabolic Engineering
- Publisher
- openRxiv
- Published
- 2022-09-16
- Volume
- 77
- Pages
- 162-173
- ISSN
- 1096-7176 (ISSN-L)
- OpenAlex
- W4362475377
- Cited by
- 37
- References
- 1
- Citations by year
- 2026: 11 · 2025: 10 · 2024: 14 · 2023: 2
- FWCI
- 3.29
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by-nc-nd
- Locations
- Metabolic Engineering (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- Concordia University
- Natural Sciences and Engineering Research Council of Canada
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant biochemistry and biosynthesis
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant tissue culture and regeneration
- Physical Sciences › Chemistry › Organic Chemistry › Isoquinoline Alkaloid Synthesis
- Keywords
- Nelumbo nucifera, benzylisoquinoline alkaloids, proaporphine alkaloids, bisbenzylisoquinoline alkaloids, N-methylcoclaurine, stereochemical inversion, O-methyltransferase, liensinine, nuciferine, papaverine, plant secondary metabolites
- MeSH terms
- Alkaloids, Spiro Compounds, Nelumbo, Benzylisoquinolines
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