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Assembly and architecture of the type III secretion sorting platform
Open accessPreprint — published as 10.1073/pnas.2218010119 · Paper page
Abstract
SUMMARY: Type III secretion systems are bacterial nanomachines specialized in protein delivery into target eukaryotic cells. The structural and functional complexity of these machines demand highly coordinated mechanisms for their assembly and operation. The sorting platform is a critical component of type III secretion machines that ensures the timely engagement and secretion of proteins destined to travel this export pathway. However, the mechanisms that lead to the assembly of this multi-component structure have not been elucidated. Herein, employing structure modeling and an extensive in vivo crosslinking strategy, we provide a detailed inter-subunit-contact survey of the entire sorting platform complex. Using the identified crosslinks as signatures for pairwise inter-subunit interactions in combination with systematic genetic deletions, we mapped the assembly process of this unique bacterial structure. Insights generated by this study could serve as the bases for the development of anti-virulence strategies to combat several medically important bacterial pathogens.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 66
- 10.1016/j.cell.2018.01.034 · DOI
- 10.1146/annurev-micro-092412-155725 · DOI
- 10.1038/nrmicro.2017.20 · DOI
- 10.1093/femsle/fny201 · DOI
- 10.1128/ecosalplus.ESP-0039-2018 · DOI
- 10.1016/j.chom.2009.04.008 · DOI
- 10.1016/j.chom.2017.07.009 · DOI
- 10.1016/j.tim.2013.06.008 · DOI
- 10.1371/journal.pgen.1002983 · DOI
- 10.1146/annurev.cellbio.17.1.53 · DOI
- 10.1126/science.280.5363.602 · DOI
- 10.1073/pnas.170128997 · DOI
- 10.1073/pnas.1008053107 · DOI
- 10.1038/s41594-018-0086-9 · DOI
- 10.1126/science.1201476 · DOI
- 10.1098/rstb.2015.0020 · DOI
- 10.1073/pnas.1916331116 · DOI
- 10.1016/j.cell.2017.02.022 · DOI
- 2020, The Type III Secretion System Sorting Platform, Curr Top Microbiol Immunol, 427, 133
- 10.1038/s41564-019-0545-z · DOI
- 2021, Substrate-engaged type III secretion system structures reveal gating mechanism for unfolded protein translocation, Nat Commun, 12, 1546, 10.1038/s41467-021-21143-1 · DOI
- 10.1073/pnas.1411610112 · DOI
- 10.1038/nmeth.3027 · DOI · Paper page
- 10.1073/pnas.172226299 · DOI
- 10.1021/bi00185a001 · DOI
- 10.1101/2021.10.04.463034 · DOI · Paper page
- 10.1126/scisignal.151re12 · DOI
- 10.1371/journal.ppat.1003307 · DOI
- 10.1074/jbc.M113.517060 · DOI
- 10.1074/jbc.M115.642538 · DOI
- 10.1038/ncomms8125 · DOI
- 10.1371/journal.ppat.1007565 · DOI
- 2019, Role of SpaO in the assembly of the sorting platform of a Salmonella type III secretion system, PLoS Pathog, 15, e1007565, 10.1371/journal.ppat.1007565 · DOI
- 10.1038/nature03992 · DOI
- 10.1016/j.jmb.2019.07.004 · DOI
- 2019, Structural analysis of ligand-bound states of the Salmonella type III secretion system ATPase InvC, Protein Sci, 28, 1888, 10.1002/pro.3704 · DOI
- 10.1073/pnas.1524025113 · DOI
- 10.1128/JB.00804-06 · DOI
- 10.1002/pro.2917 · DOI
- 10.1046/j.1365-2958.2003.03506.x · DOI
- 10.1002/prot.25754 · DOI
- 10.1038/s41467-019-08477-7 · DOI
- 10.1073/pnas.1705823114 · DOI
- 10.1038/ncomms15940 · DOI
- 10.3389/fcimb.2021.682635 · DOI
- 10.3389/fcimb.2021.682635 · DOI
- 10.1006/jmbi.1993.1489 · DOI · Paper page
- 10.1038/emboj.2011.188 · DOI
- 10.1111/j.1574-6968.2000.tb09086.x · DOI
- 10.1111/cmi.13327 · DOI
- 10.1128/JB.00538-16 · DOI
- 10.1371/journal.pbio.1002039 · DOI
- 10.1046/j.1365-2958.2000.02106.x · DOI
- 10.1038/291238a0 · DOI
- 10.1111/j.1365-2958.1994.tb00450.x · DOI
- 10.1038/nmeth.1318 · DOI
- 10.1016/B978-0-12-385120-8.00002-4 · DOI
- 10.1128/jb.177.14.4121-4130.1995 · DOI
- 10.1186/s12859-016-0996-7 · DOI
- 10.1073/pnas.89.13.5976 · DOI
- 10.1093/bioinformatics/btr507 · DOI · Paper page
- 10.1038/nmeth.1923 · DOI · Paper page
- 10.1093/nar/gkv342 · DOI
- 10.1038/s41592-022-01488-1 · DOI · Paper page
- 10.1002/jcc.20084 · DOI
- 10.1002/pro.3943 · DOI
Metadata
- Authors
- Soto, J. E., Galán, J. E., & Lara-Tejero, M.
- Affiliations
- Yale University (US)
- Corresponding author
- Galán, Jorge E.
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- openRxiv
- Published
- 2022-09-24
- Volume
- 119
- Issue
- 51
- Pages
- e2218010119-e2218010119
- ISSN
- 0027-8424 (ISSN-L)
- PMC
- PMC9907115
- OpenAlex
- W4311587853
- Cited by
- 22
- References
- 1
- Citations by year
- 2026: 8 · 2025: 7 · 2024: 2 · 2023: 5
- FWCI
- 2.20
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- cc-by-nc-nd
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- National Institute of Allergy and Infectious Diseases (R37AI030492, AI030492, AI126158)
- Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases (AI126158, AI030492)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Structural Characterization
- Keywords
- type III secretion system, protein secretion, protein complex formation, intersubunit interactions, in vivo cross-linking, gene deletion, anti-virulence strategies, pathogenic bacteria
- MeSH terms
- Type III Secretion Systems, Bacterial Proteins, Salmonella typhimurium, Protein Transport
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