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PreprintCited by 13Carbohydrate Chemistry and SynthesisPolysaccharides Composition and ApplicationsPolysaccharides and Plant Cell Walls

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Functional and structural analysis of a cyclization domain in a cyclic β-1,2-glucan synthase

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Preprint — published as 10.1007/s00253-024-13013-9 · Paper page

Abstract

Cyclic β-1,2-glucan synthase (CGS) is a key enzyme in production of cyclic β-1,2-glucans (CβGs) which are involved in bacterial infection or symbiosis to host organisms. Nevertheless, a mechanism of cyclization, the final step in the CGS reaction, has not been fully understood. Here we performed functional and structural analyses of the cyclization domain of CGS alone from Thermoanaerobacter italicus (TiCGS Cy ). We first found that β-glucosidase-resistant compounds are produced by TiCGS Cy with linear β-1,2-glucans as substrates. The 1 H-NMR analysis revealed that these products are CβGs. Next, action pattern analyses using β-1,2-glucooligosaccharides revealed a unique reaction pattern: exclusive transglycosylation without hydrolysis and a hexasaccharide as the minimum length of the substrate. Nevertheless, longer substrate β-1,2-glucooligosaccharides are preferred, being consistent with the fact that CGSs generally produce CβGs with degrees of polymerization of around 20. Finally, the overall structure of the cyclization domain of TiCGS Cy was found to be similar to those of β-1,2-glucanases in phylogenetically different groups. Meanwhile, the identified catalytic residues indicated clear difference in the reaction pathways between these enzymes. Therefore, we propose a novel reaction mechanism of TiCGS Cy . Thus, we propose that the present group of CGSs should be defined as a new glycoside hydrolase family, GHxxx. Statements and Declarations: Competing Interests: The authors declare no competing interests. Key Points: It was clearly evidenced that cyclization domain alone produces cyclic β-1,2-glucans. The domain exclusively catalyzes transglycosylation without hydrolysis. The present catalytic domain should be defined as a new glycoside hydrolase family.

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Metadata

Authors
Tanaka, N., Saito, R., Kobayashi, K., Nakai, H., Kamo, S., Kuramochi, K., Taguchi, H., Nakajima, M., & Masaike, T.
Affiliations
  • Tokyo University of Science (JP)
  • Artificial Intelligence Research Center (JP)
  • Niigata University (JP)
Corresponding author
  • Tanaka, Nobukiyo
  • Nakajima, Masahiro
  • Masaike, Tomoko
Venue
Applied Microbiology and Biotechnology
Publisher
openRxiv
Published
2023-10-30
Volume
108
Issue
1
Pages
187-187
ISSN
0175-7598 (ISSN-L)
OpenAlex
W4391448277
Cited by
13
References
1
Citations by year
2026: 3 · 2025: 6 · 2024: 4
FWCI
1.88
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Applied Microbiology and Biotechnology (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Topics
  • Physical Sciences › Chemistry › Organic Chemistry › Carbohydrate Chemistry and Synthesis
  • Life Sciences › Agricultural and Biological Sciences › Food Science › Polysaccharides Composition and Applications
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Polysaccharides and Plant Cell Walls
Keywords
transglycosylation, substrate specificity, catalytic residues, enzyme mechanism
MeSH terms
Catalysis, Cyclization, Glucans, Glycoside Hydrolases, beta-Glucans

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