PreprintCited by 24Heat shock proteins researchNanopore and Nanochannel Transport StudiesForce Microscopy Techniques and Applications

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Single-molecule evidence of Entropic Pulling by Hsp70 chaperones

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Rukes, Verena, Rebeaud, Mathieu E., Perrin, Louis, De Los Rios, Paolo, Cao, Chan·2024·Nature Communications

Preprint — published as 10.1038/s41467-024-52674-y · Paper page

Abstract

Hsp70 chaperones are central components of the cellular network that ensure the structural quality of proteins. Despite their crucial roles in processes as diverse as the prevention of protein aggregation and protein translocation into organelles, their molecular mechanism of action has remained a hotly debated issue. Due to a lack of suitable methods, no experimental data has directly proven any of the models that have been proposed (Power Stroke, Brownian Ratchet, and Entropic Pulling). Recently, nanopores have emerged as a powerful tool to analyze the function of motor enzymes, as well as protein-protein interactions. Here, we used an in vitro single-molecule nanopore to mimic in vivo translocation of proteins, and to investigate the molecular mechanism of Hsp70. Our experiments demonstrate that Hsp70s forcefully extract polypeptide substrates that are trapped inside the pore. The forces they exert are strong at the molecular level, being equivalent to 46 pN over distances of 1 nm, and depend on the size of Hsp70. These findings provide unambiguous evidence supporting the Entropic Pulling mechanism of action of Hsp70s, thus solving a long-standing debate, and proposing a potentially universal principle governing diverse cellular processes. In addition, these results emphasize the utility of biological nanopores for studying protein function at the single-molecule level.

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Research works printed but not linked: 45

  1. 10.1073/pnas.2020885118 · DOI
  2. 10.1007/s00018-004-4464-6 · DOI
  3. 10.1038/nature10317 · DOI · Paper page
  4. Z. Albakova , G. A. Armeev , L. M. Kanevskiy , E. I. Kovalenko , A. M. Sapozhnikov , HSP70 Multi-Functionality in Cancer. Cells 9, 587 (2020). · DOI
  5. 2021, Hsp70 in cancer: A double agent in the battle between survival and death, J. Cell. Physiol, 236, 3420, 10.1002/jcp.30132 · DOI
  6. 2013, F508del-CFTR Rescue: A Matter of Cell Stress Response, Curr. Pharm. Des, 19, 3476, 10.2174/13816128113199990317 · DOI
  7. 10.1038/nrm878 · DOI
  8. 1997, What is the driving force for protein import into mitochondria?, Biochim. Biophys. Acta BBA - Bioenerg, 1318, 71, 10.1016/S0005-2728(96)00131-4 · DOI
  9. 10.1016/S0092-8674(00)80767-9 · DOI
  10. 10.1073/pnas.0903503106 · DOI
  11. 10.1093/emboj/20.5.941 · DOI
  12. 10.1038/nsmb.3272 · DOI
  13. 2020, Molecular dissection of amyloid disaggregation by human HSP70, Nature, 587, 483, 10.1038/s41586-020-2904-6 · DOI
  14. 10.1073/pnas.0510496103 · DOI
  15. 10.1016/j.tibs.2007.06.008 · DOI
  16. 10.1074/jbc.M805249200 · DOI
  17. R. Imamoglu , D. Balchin , M. Hayer-Hartl , F. U. Hartl , Bacterial Hsp70 resolves misfolded states and accelerates productive folding of a multi-domain protein. Nat. Commun. 11, 365 (2020). · DOI
  18. 10.1073/pnas.2025578118 · DOI
  19. 10.1016/j.bpj.2022.09.042 · DOI
  20. 10.1016/j.jmb.2017.09.004 · DOI
  21. R. Wei , R. Tampé , U. Rant , Stochastic sensing of proteins with receptor-modified solid-state nanopores. Biophys. J. 102, 429a (2012). · DOI
  22. 2019, Real-time measurement of protein–protein interactions at single-molecule resolution using a biological nanopore, Nat. Biotechnol, 37, 96, 10.1038/nbt.4316 · DOI
  23. 2021, Modelling single-molecule kinetics of helicase translocation using high-resolution nanopore tweezers (SPRNT), Essays Biochem, 65, 109, 10.1042/EBC20200027 · DOI
  24. 2018, Biological Nanopores: Confined Spaces for Electrochemical Single-Molecule Analysis, Acc. Chem. Res, 51, 331, 10.1021/acs.accounts.7b00143 · DOI
  25. 10.1074/jbc.274.29.20110 · DOI
  26. 10.1074/jbc.M502397200 · DOI
  27. 2023, Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins, Proc. Natl. Acad. Sci, 120, e2218217120, 10.1073/pnas.2218217120 · DOI · Paper page
  28. 10.1038/nrm2941 · DOI
  29. 10.7554/eLife.02218 · DOI
  30. 10.1021/bi027333o · DOI
  31. 2015, Thermal Motion of DNA in an MspA Pore, Biophys. J, 109, 1439, 10.1016/j.bpj.2015.08.019 · DOI
  32. H. Risken , The Fokker-Planck Equation: Methods of Solution and Applications (Springer Berlin Heidelberg, Berlin, Heidelberg, 1996; https://link.springer.com/10.1007/978-3-642-61544-3) vol. 18 of Springer Series in Synergetics. · DOI
  33. 2007, Diffusion-limited unbinding of small peptides from PDZ domains, J. Phys. Chem. B, 111, 11057, 10.1021/jp0730390 · DOI
  34. 10.1038/nsmb.3283 · DOI
  35. 10.1074/jbc.M300922200 · DOI
  36. 10.1038/nchembio.455 · DOI
  37. 10.1093/NAR/GKAB1061 · DOI · Paper page
  38. 10.1002/jcc.21287 · DOI
  39. 10.1021/acs.jctc.5b00935 · DOI
  40. 2015, CAinterprTools: An R package to help interpreting Correspondence Analysis’ results, SoftwareX, 1, 26
  41. 2011, Biochemical and structural studies on the high affinity of Hsp70 for ADP, Protein Sci. Publ. Protein Soc, 20, 1367, 10.1002/pro.663 · DOI
  42. 10.1073/pnas.1504625112 · DOI
  43. 10.1529/biophysj.104.058081 · DOI
  44. 10.1126/science.276.5315.1109 · DOI
  45. 10.1073/pnas.0510496103 · DOI

Metadata

Authors
Rukes, V., Rebeaud, M. E., Perrin, L., De Los Rios, P., & Cao, C.
Affiliations
  • University of Geneva (CH)
  • École Polytechnique Fédérale de Lausanne (CH)
Corresponding author
Cao, Chan
Venue
Nature Communications
Publisher
openRxiv
Published
2024-02-08
Volume
15
Issue
1
Pages
8604-8604
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4403228838
Cited by
24
References
1
Citations by year
2026: 7 · 2025: 16 · 2024: 1
FWCI
3.27
Type
journal article
Language
en
Open access
Licence
cc-by-nc-nd
Locations
  • Nature Communications (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • Infoscience (Ecole Polytechnique Fédérale de Lausanne) (submittedVersion, cc-by-nc-nd)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Archive ouverte UNIGE (University of Geneva) (submittedVersion, other-oa)
Funders
  • National Science Foundation
  • École Polytechnique Fédérale de Lausanne
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (193090)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Heat shock proteins research
  • Physical Sciences › Engineering › Biomedical Engineering › Nanopore and Nanochannel Transport Studies
  • Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Force Microscopy Techniques and Applications
Keywords
Hsp70 chaperones, protein disaggregation, protein translocation, power stroke, Brownian ratchet, single-molecule force measurement
MeSH terms
Single Molecule Imaging, Peptides, HSP70 Heat-Shock Proteins, Entropy, Escherichia coli Proteins, Nanopores

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