PreprintCited by 0Legionella and Acanthamoeba researchBacterial Genetics and BiotechnologyBacterial biofilms and quorum sensing

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Transcription Factors DksA and PsrA are synergistic contributors to L. pneumophila virulence in Acanthamoeba castellanii protozoa

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Preprint — published as 10.1099/mic.0.001551 · Paper page

Abstract

The environmental bacterium Legionella pneumophila , an intracellular parasite of free-living freshwater protozoa as well as an opportunistic human pathogen, has a biphasic lifestyle. The switch from the vegetative replicative form to the environmentally resilient transmissive phase form is governed by a complex stringent response-based regulatory network that includes RNA polymerase co-factor DksA. Here we report that, through a dysfunctional DksA mutation (DksA1), a synergistic interplay was discovered between DksA and transcription regulator PsrA using the Acanthamoeba castellanii protozoan infection model. Surprisingly, in trans expression of PsrA partially rescued the growth defect of a dksA1 strain. While in trans expression of DksA expectantly could fully rescued the growth defect of the dksA1 strain, it could also surprisingly rescue the growth defect of a ΔpsrA strain. Conversely, the severe intracellular growth defect of a ΔdksA strain could be rescued by in trans expression of DksA and DksA1, but not PsrA. In vitro phenotypic assays show that either DksA or DksA1 were required for extended culturability of bacterial cells, but normal cell morphology and pigmentation required DksA only. Comparative structural modeling predicts that the DksA1 mutation affects coordination of Mg2+ into the active site of RNAP compromising transcription efficiency. Taken together, we propose that PsrA transcriptionally assists DksA in the expression of select transmissive phase traits. Additionally, in vitro evidence suggests that the long chain fatty chain metabolic response is mediated by PsrA together with DksA inferring a novel regulatory link to the stringent response pathway.

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  1. 10.1111/j.1365-2958.2008.06115.x · DOI
  2. 10.1128/JB.01410-08 · DOI
  3. 10.1128/IAI.74.5.3021-3026.2006 · DOI
  4. 10.1128/IAI.01081-08 · DOI
  5. 10.1128/mbio.02425-23 · DOI
  6. Ashkenazy, H. , Abadi, S. , Martz, E. , Chay, O. , Mayrose, I. , Pupko, T. and Ben-Tal, N . (2016) ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res 8; 44(W1):W344-50. · DOI · Paper page
  7. 10.1046/j.1365-2958.2001.02465.x · DOI
  8. 10.1038/ng.3481 · DOI
  9. 10.1128/IAI.00489-07 · DOI
  10. 10.1046/j.1365-2443.1998.00190.x · DOI
  11. 2010, Distinct roles of ppGpp and DksA in Legionella pneumophila differentiation, Mol Microbiol, 6, 200
  12. 10.1111/j.1365-2958.2008.06593.x · DOI
  13. 10.1111/mmi.13290 · DOI
  14. 10.1111/cmi.12450 · DOI
  15. 2014, Nutrient salvaging and metabolism by the intracellular pathogen Legionella pneumophila, Front Cell Infect Microbiol, 4, 12
  16. 10.1073/pnas.1808016116 · DOI
  17. 10.1146/annurev-micro-090817-062444 · DOI
  18. 10.1111/mmi.14760 · DOI
  19. 10.1111/mmi.15172 · DOI
  20. 10.1074/jbc.M113.479998 · DOI
  21. 10.1128/JB.181.16.4879-4889.1999 · DOI
  22. 10.1046/j.1365-2958.2002.02884.x · DOI
  23. 10.1098/rsob.170149 · DOI
  24. 10.1128/JB.01578-08 · DOI
  25. 10.1038/nrmicro1967 · DOI
  26. 10.1038/ncb883 · DOI
  27. 10.1099/mic.0.2008/018135-0 · DOI
  28. Landau, M. , Mayrose, I. , Rosenberg, Y. , Glaser, F. , Martz, E. , Pupko, T. and Ben-Tal, N . (2005) ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res 33(Web Server issue):W299-302. · DOI
  29. Lemke, J.J. , Sanchez-Vazquez, P. , Burgos, H.L. , Hedberg, G. , Ross, W. and Gourse, R.L . Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA. Proc Natl Acad Sci USA. 108(14):5712–7. · DOI · Paper page
  30. 10.7554/eLife.46086 · DOI
  31. 10.1128/JB.187.4.1527-1532.2005 · DOI
  32. 10.1128/JB.00330-07 · DOI
  33. 10.1016/j.molcel.2018.01.035 · DOI
  34. 10.1111/j.1365-2958.2004.04129.x · DOI
  35. 2020, Molecular mimicry: a paradigm of host- microbe coevolution illustrated by Legionella, mBio, 11, e01201
  36. 10.1128/AEM.02756-08 · DOI
  37. 10.3389/fmicb.2020.587098 · DOI
  38. 10.1128/JB.01175-13 · DOI
  39. 10.1128/CMR.00052-09 · DOI
  40. 10.3389/fcimb.2018.00003 · DOI
  41. 10.1073/pnas.1521365112 · DOI
  42. 10.1016/j.cell.2004.06.030 · DOI
  43. 10.1016/j.mib.2017.11.010 · DOI
  44. 10.1002/PRO.3943 · DOI
  45. 10.1099/mic.0.062117-0 · DOI
  46. 10.1146/annurev.micro.62.081307.162903 · DOI
  47. 10.1111/j.1365-2958.2009.06705.x · DOI
  48. 10.3389/fmicb.2014.00670 · DOI
  49. 10.1016/j.molcel.2013.03.021 · DOI
  50. 10.1016/j.molcel.2016.04.029 · DOI
  51. 1986, Current views on the relationships between amoebae, legionellae and man, Isr J Med Sci, 22, 678
  52. 10.1111/j.1365-2958.2009.06677.x · DOI
  53. 10.4161/rna.20270 · DOI
  54. 10.1371/journal.pgen.1006629 · DOI
  55. 10.1111/mmi.12612 · DOI
  56. 10.1021/acs.jcim.1c01114 · DOI · Paper page
  57. 10.1128/aem.61.6.2428-2430.1995 · DOI
  58. 10.1111/j.1574-6976.2002.tb00607.x · DOI
  59. 10.1111/mmi.13365 · DOI
  60. 2017, Legionella pneumophila OxyR Is a redundant transcriptional regulator that contributes to expression control of the two-component CpxRA system, J Bacteriol, 199, e00690
  61. 10.1111/j.1462-5822.2007.01005.x · DOI
  62. 10.1128/JB.01002-08 · DOI
  63. 10.1242/jcs.114.24.4637 · DOI
  64. 10.1111/mmi.14860 · DOI
  65. 10.1128/JB.06238-11 · DOI
  66. 10.1111/j.1365-2958.1994.tb00343.x · DOI
  67. 10.1128/JB.184.1.67-75.2002 · DOI
  68. 10.1111/j.1365-2958.2007.05604.x · DOI

Metadata

Authors
Graham, C. I., Gierys, A. J., MacMartin, T. L., Penner, T. V., Beck, J. C., Prehna, G., de Kievit, T. R., & Brassinga, A. K. C.
Affiliations
University of Manitoba (CA)
Corresponding author
Brassinga, Ann Karen C
Venue
Microbiology
Publisher
openRxiv
Published
2024-07-09
Volume
171
Issue
4
ISSN
1350-0872 (ISSN-L)
OpenAlex
W4409459153
Cited by
0
References
1
FWCI
0.00
Type
journal article
Language
en
Open access
Locations
  • Microbiology (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
Natural Sciences and Engineering Research Council of Canada (2018-04968, rgpin-2019-05490, 2019-05490, rgpin-2018-04968, 2017-04970)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Endocrinology › Legionella and Acanthamoeba research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
Keywords
Legionella pneumophila, DksA, stringent response, RNA polymerase sigma factor, transcriptional regulation, Acanthamoeba castellanii, intracellular bacterial growth, virulence, Mg2+ coordination, long-chain fatty acid metabolism, bacterial pigmentation, bacterial morphology
MeSH terms
Bacterial Proteins, Mutation, Transcription Factors, Virulence, Gene Expression Regulation, Bacterial, Legionella pneumophila, Acanthamoeba castellanii

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