PreprintCited by 4Amyloidosis: Diagnosis, Treatment, OutcomesProtein Structure and DynamicsMultiple Myeloma Research and Treatments

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

A conformational fingerprint for amyloidogenic light chains

Open access

Preprint — published as 10.7554/elife.102002

Abstract

Immunoglobulin light chain amyloidosis (AL) and multiple myeloma (MM) both share the overproduction of a clonal light chain (LC). However, while LCs in MM remain soluble in circulation, AL LCs misfold into toxic soluble species and amyloid fibrils that accumulate in organs, leading to distinct clinical manifestations. The significant sequence variability of LCs has hindered understanding of the mechanisms driving LC aggregation. Nevertheless, emerging biochemical properties, including dimer stability, conformational dynamics, and proteolysis susceptibility, distinguish AL LCs from those in MM under native conditions. This study aimed to identify a conformational fingerprint distinguishing AL from MM LCs. Using small-angle X-ray scattering (SAXS) under native conditions, we analyzed four AL and two MM LCs. We observed that AL LCs exhibited a slightly larger radius of gyration and greater deviations from X-ray crystallography-determined or predicted structures, reflecting enhanced conformational dynamics. SAXS data, integrated with molecular dynamics (MD) simulations, revealed a conformational ensemble where LCs adopt multiple states, with variable and constant domains either bent or straight. AL LCs displayed a distinct, low-populated, straight conformation (termed H state), which maximized solvent accessibility at the interface between constant and variable domains. Hydrogen-deuterium exchange mass spectrometry (HDX-MS) experimentally validated this H state. These findings reconcile diverse experimental observations and provide a precise structural target for future drug design efforts.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2024.07.12.603200

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 72

  1. 10.1038/s41572-018-0034-3 · DOI
  2. 10.1039/C8CC04396E · DOI
  3. P. Cascino , et al., Single-molecule real-time sequencing of the M protein: Toward personalized medicine in monoclonal gammopathies. American J Hematol 97 (2022). · DOI
  4. 10.1371/journal.pone.0005169 · DOI
  5. 10.1182/blood-2011-05-355784 · DOI
  6. 10.1182/blood-2016-10-743997 · DOI
  7. 10.1182/blood.V98.3.714 · DOI
  8. 10.1111/febs.16390 · DOI
  9. 10.1107/S0907444902004183 · DOI
  10. M. L. Chiu , D. R. Goulet , A. Teplyakov , G. L. Gilliland , Antibody structure and function: The basis for engineering therapeutics. Antibodies 8, 55 (2019). · DOI
  11. 10.1146/annurev.biochem.76.061705.090740 · DOI
  12. 10.1038/s41598-017-16953-7 · DOI
  13. 10.1038/s41467-021-21126-2 · DOI
  14. 10.1038/s41467-021-26553-9 · DOI
  15. 10.1038/s41467-019-09032-0 · DOI
  16. 10.1038/s41467-019-09133-w · DOI
  17. 10.1016/j.jmb.2023.168215 · DOI
  18. S. Ricagno , et al., Helical superstructures between amyloid and collagen VI in heart-derived fibrils from a patient with Light Chain Amyloidosis. [Preprint] (2023). Available at: https://www.researchsquare.com/article/rs-3625869/v1 [Accessed 16 April 2024].
  19. 10.1074/jbc.RA120.013461 · DOI
  20. 10.1111/febs.16182 · DOI
  21. 10.1021/acs.jproteome.5b00015 · DOI
  22. 10.1016/j.jbc.2021.100334 · DOI
  23. 10.1073/pnas.1817538116 · DOI
  24. 10.1080/13506129.2023.2212397 · DOI
  25. 10.1016/j.jmb.2018.10.024 · DOI
  26. 10.1016/j.cbpa.2023.102280 · DOI
  27. 10.1016/j.jmb.2019.12.015 · DOI
  28. 10.1016/j.jmb.2023.168320 · DOI
  29. 10.3390/ijms20020396 · DOI
  30. 10.1016/j.bpj.2020.07.015 · DOI
  31. 10.1038/srep25559 · DOI
  32. 10.1038/s41467-018-04078-y · DOI
  33. 10.1111/febs.15046 · DOI
  34. 10.1038/srep31232 · DOI
  35. 10.1126/sciadv.1501177 · DOI
  36. 10.1021/acs.jctc.9b01181 · DOI
  37. 10.3389/fmolb.2021.694130 · DOI
  38. 10.1016/j.jmb.2021.167119 · DOI
  39. 10.3389/fmolb.2021.654333 · DOI
  40. 10.1042/BST20210499 · DOI
  41. 10.1016/j.bbrc.2022.02.029 · DOI
  42. 10.1016/j.str.2019.04.004 · DOI
  43. 10.1126/science.1214203 · DOI
  44. 2021, A Conservative Point Mutation in a Dynamic Antigen-binding Loop of Human Immunoglobulin λ6 Light Chain Promotes Pathologic Amyloid Formation, Journal of Molecular Biology, 3, 167310
  45. 10.1016/j.jmb.2015.09.012 · DOI
  46. 10.1038/s42003-023-04574-y · DOI
  47. 10.1038/s41467-021-23880-9 · DOI
  48. 10.1038/s41467-023-39280-0 · DOI
  49. 10.1016/j.str.2010.02.012 · DOI
  50. 10.7554/eLife.52300 · DOI
  51. 10.1006/jmbi.1997.1354 · DOI
  52. 10.1107/S160057671500254X · DOI
  53. 10.1088/1742-6596/247/1/012009 · DOI
  54. 10.1107/S1600576720013412 · DOI
  55. 10.1093/nar/gku1047 · DOI
  56. 2016, Current protocols in bioinformatics, 54, 5.6.1
  57. 10.1093/nar/gky427 · DOI
  58. 2015, GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers, Softwarex, 1–2, 19
  59. 10.1016/j.cpc.2013.09.018 · DOI
  60. 10.1093/bioinformatics/btx529 · DOI
  61. 10.1038/s41592-019-0506-8 · DOI
  62. S. Piana , P. Robustelli , D. Tan , S. Chen , D. E. Shaw , Development of a force field for the simulation of single-chain proteins and protein-protein complexes. J Chem Theory Comput (2020). · DOI
  63. 2015, Water dispersion interactions strongly influence simulated structural properties of disordered protein states, J Phys Chem B, 119, 5113, 10.1021/jp508971m · DOI
  64. 10.1063/1.4981211 · DOI
  65. 10.1063/1.2408420 · DOI
  66. 10.1063/1.328693 · DOI
  67. 10.1021/ct5010406 · DOI
  68. 10.1021/acs.jctc.5b00846 · DOI
  69. 10.1021/acs.jctc.3c00864 · DOI · Paper page
  70. 10.1021/ct3002464 · DOI
  71. 10.1038/s41592-019-0459-y · DOI
  72. 10.1016/j.jmb.2022.167553 · DOI

Metadata

Authors
Paissoni, C., Puri, S., Broggini, L., Sriramoju, M. K., Maritan, M., Russo, R., Speranzini, V., Ballabio, F., Nuvolone, M., Merlini, G., Palladini, G., Hsu, S.-T. D., Ricagno, S., & Camilloni, C.
Affiliations
  • University of Milan (IT)
  • IRCCS Policlinico San Donato (IT)
  • Institute of Biological Chemistry, Academia Sinica (TW)
  • University of Pavia (IT)
Corresponding author
Camilloni, Carlo
Venue
eLife
Publisher
openRxiv
Published
2024-07-13
Volume
13
ISSN
2050-084X (ISSN-L)
OpenAlex
W4400603335
Cited by
4
References
1
Citations by year
2026: 2 · 2024: 2
FWCI
0.60
Type
journal article
Language
en
Open access
Locations
  • eLife (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
Funders
  • Fondazione AIRC per la ricerca sul cancro ETS (IG 2024 ID 30307)
  • Academia Sinica (AS-CDA-109-L08, AS-IV-114-L04)
  • Fondazione Cariplo (Telethon GJC23044)
  • Ministero della Salute (GR‐2018‐12 368 387)
  • National Science and Technology Council (110-2113-M-001-050-MY3, 113-2123-M-001-010-, 113-2811-M-001-110)
  • Ministero dell'Università e della Ricerca (PRIN 20207XLJB2)
Topics
  • Health Sciences › Medicine › Internal Medicine › Amyloidosis: Diagnosis, Treatment, Outcomes
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
  • Health Sciences › Medicine › Hematology › Multiple Myeloma Research and Treatments
Keywords
immunoglobulin light chain amyloidosis, multiple myeloma, amyloid fibrils, conformational dynamics, conformational ensembles, hydrogen-deuterium exchange, radius of gyration, solvent accessibility, small-angle X-ray scattering, molecular dynamics simulation, drug design targets

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review