PreprintCited by 6Metalloenzymes and iron-sulfur proteinsGenomics and Phylogenetic StudiesEnzyme Structure and Function

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Evolutionary plasticity and functional repurposing of the essential metabolic enzyme MoeA

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Megrian, Daniela, Martinez, Mariano, Alzari, Pedro M, Wehenkel, Anne Marie·2024·Communications Biology

Preprint — published as 10.1038/s42003-025-07476-3 · Paper page

Abstract

MoeA, or gephyrin in higher eukaryotes, is crucial for molybdenum cofactor biosynthesis required in redox reactions. Gephyrin is a moonlighting protein also involved in postsynaptic receptor clustering, a feature thought to be a recent evolutionary trait. We showed previously that a repurposed copy of MoeA (Glp) is involved in bacterial cell division. To investigate how MoeA acquired multifunctionality, we used phylogenetic inference and protein structure analyses to understand the diversity and evolutionary history of MoeA. Glp-expressing Bacteria have at least two copies of the gene, and our analysis suggests that Glp has lost its enzymatic role. In Archaea we identified an ancestral duplication where one of the paralogs might bind tungsten instead of molybdenum. In eukaryotes, the acquisition of the moonlighting activity of gephyrin comprised three major events: first, MoeA was obtained from Bacteria by early eukaryotes, second, MogA was fused to the N-terminus of MoeA in the ancestor of opisthokonts, and finally, it acquired the function of anchoring GlyR receptors in neurons. Our results support the functional versatility and adaptive nature of the MoeA scaffold, which has been repurposed independently both in eukaryotes and bacteria to carry out analogous functions in network organization at the cell membrane.

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  1. 10.1038/ismej.2017.122 · DOI
  2. 10.1021/bi7020487 · DOI
  3. 10.1021/cb900021q · DOI
  4. 10.1016/j.tree.2019.08.008 · DOI · Paper page
  5. 10.1093/bioinformatics/btp348 · DOI
  6. 10.1016/j.cell.2018.02.016 · DOI · Paper page
  7. 10.1038/EMM.2015.5 · DOI
  8. 10.1093/bioinformatics/btp163 · DOI · Paper page
  9. Etchebehere, C. , Zorzopulos, ∼ J , Soubes’, M. , & Muxi’, L. (n.d.). Coprothermobacter platensis S p m now, a new anaerobic proteolytic thermophilic bacterium isolated from an anaerobic mesophilic sludge. In Journal of Systematic Bacteriology (Vol. 48). · DOI
  10. Guangsheng, C. , Plugge, C. M. , Roelofsen, W. , Houwen, F. P. , & Stams, A. J. M. (1992). Selenomonas acidaminovorans sp. nov., a versatile thermophilic proton-reducing anaerobe able to grow by decarboxylation of succinate to propionate. In Arch Microblol (Vol. 157). · DOI
  11. 10.1016/j.ccr.2011.02.009 · DOI
  12. 10.1186/1471-2105-11-431 · DOI
  13. 10.1093/molbev/mst010 · DOI · Paper page
  14. 10.1016/j.plantsci.2015.12.011 · DOI
  15. Kirsch, J. , Langosch, D. , Littauer, U. Z. , Schmitt, B. , & Betz, H. (1991). The 93-kDa Glycine Receptor-associated Protein Binds to Tubulin*. In Inc OF BIOLOGICAL CHEMISTRY (Vol. 266, Issue 33). · DOI
  16. 10.1111/1462-2920.15003 · DOI
  17. 10.1093/nar/gkz239 · DOI
  18. 10.1099/ijs.0.044719-0 · DOI
  19. 10.1002/bies.20413 · DOI
  20. Maia, L. B. , Moura, I. , & Moura, J. J. G. (2017). Molybdenum and Tungsten-Containing Enzymes: An Overview. In Russ Hille (Ed.), Molybdenum and Tungsten Enzymes: Biochemistry. Royal Society of Chemistry. www.rsc.org · DOI
  21. 10.1093/nar/gkh454 · DOI
  22. 10.1038/s41564-023-01473-0 · DOI
  23. 10.1016/j.bbamcr.2020.118883 · DOI
  24. 10.3389/fmicb.2017.01134 · DOI
  25. Megrian, D. , Taib, N. , Jaffe, A. L. , Banfield, J. F. , & Gribaldo, S . (2022). Ancient origin and constrained evolution of the division and cell wall (dcw) gene cluster across the Tree of Bacteria. Nature Microbiology. · DOI
  26. 10.1007/s00775-014-1173-y · DOI
  27. 10.1128/JB.01531-10 · DOI
  28. 10.1093/molbev/msu300 · DOI · Paper page
  29. 2001, AL2CO: calculation of positional conservation in a protein sequence alignment, In BIOINFORMATICS, 17, 8
  30. 10.1038/s41467-021-23099-8 · DOI
  31. 10.1186/s12864-017-4368-0 · DOI
  32. 10.1002/pro.3943 · DOI
  33. Rizopoulos, D . (2006). ltm: An R Package for Latent Variable Modeling and Item Response Theory Analyses. In JSS Journal of Statistical Software (Vol. 17). http://www.jstatsoft.org/ · DOI
  34. 10.1093/nar/gkab1112 · DOI · Paper page
  35. 10.1007/s00018-005-5269-y · DOI
  36. Schwarz, G. , Schulze, J. , Bittner, F. , Eilers, T. , Kuper, J. , Bollmann, G. , Nerlich, A. , Brinkmann, H. , & Mendel, R. R. (2000). The Molybdenum Cofactor Biosynthetic Protein Cnx1 Complements Molybdate-Repairable Mutants, Transfers Molybdenum to the Metal Binding Pterin, and Is Associated with the Cytoskeleton. In The Plant Cell (Vol. 12). https://academic.oup.com/plcell/article/12/12/2455/6009386 · DOI
  37. 10.1099/ijs.0.02699-0 · DOI
  38. 10.1038/sj.emboj.7600256 · DOI
  39. Stallmeyer, B. , Schwarz, G. , Schulze, J. , Nerlich, A. , Reiss, J. , Kirsch, J. , & Mendel, R. R. (1999). The neurotransmitter receptor-anchoring protein gephyrin reconstitutes molybdenum cofactor biosynthesis in bacteria, plants, and mammalian cells (Vol. 96). www.pnas.org. · DOI
  40. 10.1038/nrn3670 · DOI
  41. 10.1038/nmicrobiol.2016.116 · DOI · Paper page
  42. 10.1002/bies.201300037 · DOI
  43. Zeikus, J. G. , Dawson, M. A. , Thompson, T. E. , Ingvorsen, K. , & Hatchikian, E. C . (1983). Microbial Ecology of Volcanic Sulphidogenesis: Isolation and Characterization of Thevmodesulfobacteviurn commune gen. nov. and sp. nov. In Journal of’ General Microbiology (Vol. 129). · DOI
  44. 10.1016/j.ccr.2011.02.016 · DOI
  45. 10.3389/fmicb.2020.615860 · DOI

Metadata

Authors
Megrian, D., Martinez, M., Alzari, P. M., & Wehenkel, A. M.
Affiliations
Centre National de la Recherche Scientifique (FR)
Corresponding author
  • Megrian, Daniela
  • Wehenkel, Anne Marie
Venue
Communications Biology
Publisher
openRxiv
Published
2024-07-23
Volume
8
Issue
1
Pages
49-49
ISSN
2399-3642 (ISSN-L)
OpenAlex
W4406362311
Cited by
6
References
1
Citations by year
2026: 4 · 2025: 2
FWCI
0.83
Type
journal article
Language
en
Open access
Locations
  • Communications Biology (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by-nc-nd)
  • HAL (submittedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Agence Nationale de la Recherche (ANR-18-CE11-0017, ANR18, ANR-21-CE11-0003, ANR-18-CE11)
  • Centre National de la Recherche Scientifique (ANR-18-CE11)
  • National Institutes of Health
  • University of California, San Francisco
  • National Institute of General Medical Sciences (R01GM129325)
  • National Institute of Allergy and Infectious Diseases
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Metalloenzymes and iron-sulfur proteins
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
Keywords
multi-objective evolutionary algorithms, gephyrin, molybdenum cofactor biosynthesis, evolutionary plasticity, actinobacteria, bacterial cell division, MOGA, gene duplication, archaeal evolution, eukaryotic evolution, protein evolution

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