PreprintCited by 25RNA modifications and cancerRNA and protein synthesis mechanismsPlant Molecular Biology Research

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Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth

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Guo, Q., Ng, PQ., Shi, S., Fan, D., Li, J., Wang, H., Do, T., David, R., Mittal, P., Bock, R., Zhao, M., Zhou, W., Searle, I. R.·2018·PLoS ONE

Preprint — published as 10.1371/journal.pone.0225064 · Paper page

Abstract

Modified nucleosides in tRNAs are critical for protein translation. N 1 -methylguanosine-37 and N 1 -methylinosine-37 in tRNAs, both located at the 3’-adjacent to the anticodon, are formed by Trm5 and here we describe Arabidopsis thaliana AtTrm5 (At3g56120) as a Trm5 ortholog. We show that AtTrm5 complements the yeast trm5 mutant, and in vitro methylates tRNA guanosine-37 to produce N 1 -methylguanosine (m 1 G). We also show in vitro that AtTRM5 methylates tRNA inosine-37 to produce N 1 -methylinosine (m 1 I) and in Attrm5 mutant plants, we show a reduction of both N 1 -methylguanosine and N 1 -methylinosine. We also show that AtTRM5 is localized to the nucleus in plant cells. Attrm5 mutant plants have overall slower growth as observed by slower leaf initiation rate, delayed flowering and reduced primary root length. In Attrm5 mutants, mRNAs of flowering time genes are less abundant and correlated with delayed flowering. Finally, proteomics data show that photosynthetic protein abundance is affected in mutant plants. Our findings highlight the bifunctionality of AtTRM5 and the importance of the post-transcriptional tRNA modifications m 1 G and m 1 I at tRNA position 37 in general plant growth and development.

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Metadata

Authors
Guo, Q., Ng, P., Shi, S., Fan, D., Li, J., Wang, H., Do, T., David, R., Mittal, P., Bock, R., Zhao, M., Zhou, W., & Searle, I. R.
Affiliations
  • Chinese Academy of Agricultural Sciences (CN)
  • Shanghai Jiao Tong University (CN)
  • Chinese Academy of Sciences (CN)
  • ARC Centre of Excellence in Plant Energy Biology (AU)
  • The University of Adelaide (AU)
  • Max Planck Institute of Molecular Plant Physiology (DE)
Corresponding author
  • Zhou, W.
  • Searle, I. R.
Venue
PLoS ONE
Publisher
openRxiv
Published
2018-12-03
Volume
14
Issue
11
Pages
e0225064-e0225064
ISSN
1932-6203 (ISSN-L)
OpenAlex
W2989581388
Cited by
25
References
1
Citations by year
2026: 2 · 2025: 7 · 2024: 2 · 2023: 2 · 2022: 5 · 2021: 6 · 2020: 1
FWCI
0.99
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • PLoS ONE (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Figshare (submittedVersion, cc-by)
  • MPG.PuRe (Max Planck Society) (submittedVersion)
Funders
  • Australian Cancer Research Foundation
  • University of Adelaide
  • National Natural Science Foundation of China (31570234)
  • Chinese Academy of Agricultural Sciences
  • Department of Industry, Innovation and Science, Australian Government (ACSRF48187)
  • Australian Research Council (FT130100525)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA modifications and cancer
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
Keywords
Arabidopsis thaliana, plant growth, delayed flowering, leaf initiation, root length, photosynthetic proteins, nuclear localization
MeSH terms
Base Sequence, Cell Nucleus, Guanine, Inosine, Phenotype, Photosynthesis, tRNA Methyltransferases, Conserved Sequence, Genes, Plant, Arabidopsis, Gene Expression Regulation, Plant, Plant Leaves, Plant Roots, RNA, Plant, Arabidopsis Proteins, Flowers, Circadian Clocks

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