PreprintCited by 65Neurogenesis and neuroplasticity mechanismsProtein Kinase Regulation and GTPase SignalingGenetics and Neurodevelopmental Disorders

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

FICD activity and AMPylation remodelling modulate human neurogenesis

Open access

Preprint — published as 10.1038/s41467-019-14235-6 · Paper page

Abstract

Posttranslational modification (PTM) of proteins represents an important cellular mechanism for controlling diverse functions such as signalling, localisation or protein-protein interactions 1 . AMPylation (also termed adenylylation) has recently been discovered as a prevalent PTM for regulating protein activity 2 . In human cells AMPylation has been exclusively studied with the FICD protein 3–6 . Here we investigate the role of AMPylation in human neurogenesis by introducing a cell-permeable propargyl adenosine pronucleotide probe to infiltrate cellular AMPylation pathways and report distinct modifications in intact cancer cell lines, human-derived stem cells, neural progenitor cells (NPCs), neurons and cerebral organoids (COs) via LC-MS/MS as well as imaging methods. A total of 162 AMP modified proteins were identified. FICD-dependent AMPylation remodelling accelerates differentiation of neural progenitor cells into mature neurons in COs, demonstrating a so far unknown trigger of human neurogenesis.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/787929

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 47

  1. 2017, Enzymes Involved in AMPylation and deAMPylation, Chem. Rev, 118, 1199
  2. 10.1074/jbc.M114.612515 · DOI
  3. 10.1074/jbc.M114.618348 · DOI
  4. Preissler, S. et al. AMPylation matches BiP activity to client protein load in the endoplasmic reticulum. Elife 4, e12621 (2015). · DOI
  5. 10.1038/nsmb.3337 · DOI
  6. 10.1016/j.tcb.2014.10.004 · DOI
  7. Vogl, A. M. et al. Neddylation inhibition impairs spine development, destabilizes synapses and deteriorates cognition. Nature neuroscience 18, 239 (2015). · DOI
  8. 10.1073/pnas.58.4.1703 · DOI
  9. 10.1126/science.1166382 · DOI
  10. 10.1016/j.molcel.2009.03.008 · DOI
  11. 10.1038/nature10729 · DOI
  12. Preissler, S. et al. AMPylation targets the rate-limiting step of BiP’s ATPase cycle for its functional inactivation. Elife 6, e29428 (2017). · DOI
  13. 10.1038/nn.3102 · DOI
  14. 10.1074/jbc.M117.799296 · DOI
  15. Moehlman, A. , Casey, A. , Servage, K. , Orth, K. & Krämer, H. Adaptation to constant light requires Fic-mediated AMPylation of BiP to protect against reversible photoreceptor degeneration.Elife 7, e38752 (2018). · DOI
  16. 10.1016/j.cell.2018.07.016 · DOI · Paper page
  17. 10.1021/ja205137d · DOI
  18. 10.1002/cbic.201100743 · DOI
  19. 10.1074/mcp.O115.054429 · DOI
  20. 2018, The ProTide Prodrug Technology: From the Concept to the Clinic, J. Med. Chem, 61, 2211, 10.1021/acs.jmedchem.7b00734 · DOI
  21. 10.1021/cr050288g · DOI
  22. 2009, Multiplex peptide stable isotope dimethyl labelling for quantitative proteomics Nat, Protoc, 4, 484, 10.1038/nprot.2009.21 · DOI
  23. 10.1074/mcp.M113.031591 · DOI · Paper page
  24. 2017, Chemical proteomics reveals ADP-ribosylation of small GTPases during oxidative stress, Nat. Chem. Biol, 13, 302, 10.1038/nchembio.2280 · DOI
  25. 10.1016/j.molcel.2015.06.012 · DOI
  26. 10.1126/science.aaf7865 · DOI
  27. 10.1038/nature18002 · DOI · Paper page
  28. 10.1016/j.arr.2016.04.010 · DOI · Paper page
  29. 2016, Metabolic reprogramming during neuronal differentiation, Cell Death Differ, 23, 1502, 10.1038/cdd.2016.36 · DOI
  30. 10.1038/nrc4027 · DOI
  31. 10.1016/j.cell.2008.02.041 · DOI · Paper page
  32. 10.1038/nature17041 · DOI · Paper page
  33. 10.1016/j.chembiol.2018.10.007 · DOI
  34. 2012, Dopaminergic differentiation of human pluripotent cells, Cur. Prot. Stem Cell Biol, 22, 1H.6.1
  35. 2015, Proteomic Profiling and Functional Characterization of Multiple Post-Translational Modifications of Tubulin, J. Proteom. Res, 14, 3292, 10.1021/acs.jproteome.5b00308 · DOI
  36. 2017, Direct Neuronal Reprogramming: Achievements, Hurdles, and New Roads to Success, Cell Stem Cell, 21, 18, 10.1016/j.stem.2017.06.011 · DOI
  37. 2016, Metabolic Incorporation of Azide Functionality into Cellular RNA, ChemBioChem, 17, 2149, 10.1002/cbic.201600300 · DOI
  38. 2015, Human cerebral organoids recapitulate gene expression programs of fetal neocortex development, Proc. Natl. Acad. Sci. U.S.A, 51, 15672
  39. 10.1038/nature22047 · DOI · Paper page
  40. 10.1038/nature12517 · DOI · Paper page
  41. 2018, ER Proteostasis Control of Neuronal Physiology and Synaptic Function, Trends Neurosci, 41, 610, 10.1016/j.tins.2018.05.009 · DOI
  42. 10.1016/j.neuron.2017.04.042 · DOI
  43. 2009, Mechanism-Based Small Molecule Probes for Labeling CD38 on Live Cells, J. Am. Chem. Soc, 131, 1658, 10.1021/ja808387g · DOI
  44. 10.1039/c2mb25144b · DOI
  45. 10.1021/jm9007856 · DOI
  46. 2009, Activity Based Protein Profiling (ABPP) and Click Chemistry (CC)-ABPP by MudPIT Mass Spectrometry, Current protocols in chemical biology, 1, 29, 10.1002/9780470559277.ch090138 · DOI
  47. 2012, Fiji: an open-source platform for biological-image analysis, Nat. Methods, 7, 676

Metadata

Authors
Kielkowski, P., Buchsbaum, I. Y., Kirsch, V. C., Bach, N. C., Drukker, M., Cappello, S., & Sieber, S. A.
Affiliations
  • Technical University of Munich (DE)
  • Max Planck Institute of Psychiatry (DE)
  • Helmholtz Munich (DE)
Corresponding author
  • Cappello, Silvia
  • Sieber, Stephan A.
Venue
Nature Communications
Publisher
openRxiv
Published
2019-10-01
Volume
11
Issue
1
Pages
517-517
ISSN
2041-1723 (ISSN-L)
OpenAlex
W3001174176
Cited by
65
References
1
Citations by year
2026: 8 · 2025: 8 · 2024: 8 · 2023: 3 · 2022: 14 · 2021: 12 · 2020: 12
FWCI
4.04
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Nature Communications (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • Leiden Repository (Leiden University) (submittedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • mediaTUM (Technical University of Munich) (submittedVersion, other-oa)
  • Leiden Repository (Leiden University) (submittedVersion)
  • Site cant be reached (submittedVersion, cc-by)
  • MPG.PuRe (Max Planck Society) (submittedVersion, cc-by)
  • PuSH - Publication Server of Helmholtz Zentrum München (submittedVersion, cc-by)
  • Data Archiving and Networked Services (DANS) (submittedVersion, cc-by)
Funders
H2020 European Research Council (725085)
Topics
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
Keywords
AMPylation, adenylylation, post-translational modification, neural progenitor cells, brain organoids, neuronal differentiation
MeSH terms
Adenosine, Adenosine Monophosphate, Amino Acid Sequence, Cathepsin B, Cell Differentiation, Humans, Membrane Proteins, Neurons, Nucleotidyltransferases, Organoids, Protein Processing, Post-Translational, Down-Regulation, Cell Line, Tumor, Neurogenesis, Neural Stem Cells

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review