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Calling Somatic SNVs and Indels with Mutect2
Open accessAbstract
Mutect2 is a somatic variant caller that uses local assembly and realignment to detect SNVs and indels. Assembly implies whole haplotypes and read pairs, rather than single bases, as the atomic units of biological variation and sequencing evidence, improving variant calling. Beyond local assembly and alignment, Mutect2 is based on several probabilistic models for genotyping and filtering that work well with and without a matched normal sample and for all sequencing depths.
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Metadata
- Authors
- Benjamin, D., Sato, T., Cibulskis, K., Getz, G., Stewart, C., & Lichtenstein, L.
- Venue
- bioRxiv (Cold Spring Harbor Laboratory)
- Publisher
- openRxiv
- Published
- 2019-12-02
- OpenAlex
- W2990871782
- Cited by
- 706
- References
- 0
- Type
- posted content
- Language
- en
- Open access
- green
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- CoChat. (2026). Citation check: Calling Somatic SNVs and Indels with Mutect2. https://app.cochat.ai/papers/10.1101/861054
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- Benjamin, D., Sato, T., Cibulskis, K., Getz, G., Stewart, C., & Lichtenstein, L. (2019). Calling Somatic SNVs and Indels with Mutect2. bioRxiv (Cold Spring Harbor Laboratory). https://doi.org/10.1101/861054
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