Prokaryotic Nucleotide Excision Repair
Kisker, C., Kuper, J., Van Houten, B.·2013·Cold Spring Harbor Perspectives in Biology
Cited by (191)
Items 101–191 of 191
- Movement of the β-hairpin in the third zinc-binding module of UvrA is required for DNA damage recognitionThanyalak Kraithong, Ketsaraphorn Channgam, Ornchuma Itsathitphaisarn, Montip Tiensuwan, David Jeruzalmi, Danaya Pakotiprapha · 2017 · DNA repair
- The Genetic Determinants of Extreme UV Radiation and Desiccation Tolerance in a Bacterium Recovered from the StratosphereAdam J. Ellington, Tyler J. Schult, Christopher R. Reisch, Brent C. Christner · 2025 · Microorganisms
- A framework predicting removal efficacy of antibiotic resistance genes during disinfection processes with machine learningRuixing Huang, Chengxue Ma, Xiaoliu Huangfu, Jun Ma · 2025 · Journal of Hazardous Materials
- Identification of Escherichia coli ygaQ and rpmG as novel mitomycin C resistance factors implicated in DNA repairEdward L. Bolt, Tabitha Jenkins, Valeria Moreira Russo, Sharlene Ahmed, James R. Cavey, Simon Cass · 2015 · Bioscience Reports
- Real-time investigation of the roles of ATP hydrolysis by UvrA and UvrB during DNA damage recognition in nucleotide excision repairThanyalak Kraithong, Jeerus Sucharitakul, Chittanon Buranachai, David Jeruzalmi, Pimchai Chaiyen, Danaya Pakotiprapha · 2020 · DNA repair
- Listeria monocytogenes utilizes the ClpP1/2 proteolytic machinery for fine-tuned substrate degradation at elevated temperaturesDóra Balogh, Konstantin Eckel, Christian Fetzer, Stephan A. Sieber · 2022 · RSC Chemical Biology
- Deciphering the essentiality and function of SxSx motif in Mycobacterium tuberculosis UvrBManoj Thakur, Kalappa Muniyappa · 2020 · Biochimie
- Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clamsShigeru Shimamura, Takashi Kaneko, Genki Ozawa, Mamiko Nishino Matsumoto, Takeru Koshiishi, Yoshihiro Takaki, Chiaki Kato, Ken Takai, Takao Yoshida, Katsunori Fujikura et al. · 2017 · PLoS ONE
- Genome assembly of Chryseobacterium sp. strain IHBB 10212 from glacier top-surface soil in the Indian trans-Himalayas with potential for hydrolytic enzymesMohinder Pal, Mohit Kumar Swarnkar, Hena Dhar, Sanjay Chhibber, Arvind Gulati · 2017 · Genomics Data
- Global genome and transcription-coupled nucleotide excision repair pathway in prokaryotesManoj Thakur, Kalappa Muniyappa · 2023 · Journal of Biosciences
- Real-time single-molecule visualization using DNA curtains reveals the molecular mechanisms underlying DNA repair pathwaysSubin Kim, Youngseo Kim, Ja Yil Lee · 2023 · DNA repair
- Spatial coupling between DNA replication and mismatch repair in Caulobacter crescentusTiancong Chai, Céline Terrettaz, Justine Collier · 2021 · Nucleic Acids Research
- Insight into Single-Molecule Imaging Techniques for the Study of Prokaryotic Genome MaintenanceNischal Sharma, A. V. van Oijen, Lisanne M. Spenkelink, Stefan H. Mueller · 2024 · Chemical & Biomedical Imaging
- Cellular Responses to Aflatoxin-Associated DNA AdductsMichael Fasullo · 2019 · IntechOpen eBooks
- The bile salt deoxycholate induces Campylobacter jejuni genetic point mutations that promote increased antibiotic resistance and fitnessPrabhat Kumar Talukdar, Torin M. Crockett, Lisa M. Gloss, Steven Huynh, Steven A. Roberts, Kyrah L. Turner, S. Lewis, Tristin Herup-Wheeler, Craig Thomas Parker, Michael E. Konkel · 2022 · Frontiers in Microbiology
- Excision of the doubly methylated base N 4 ,5-dimethylcytosine from DNA by Escherichia coli Nei and Fpg proteinsMarina Alexeeva, Prashanna Guragain, Almaz Nigatu Tesfahun, Miglė Tomkuvienė, Aysha Arshad, Rūta Gerasimaitė, Audronė Rukšėnaitė, Giedrė Urbanavičiūtė, Magnar Bjørås, Jon K. Laerdahl et al. · 2018 · Philosophical Transactions of the Royal Society B Biological Sciences
- How Salmonella Works Under Osmotic and Desiccation StressesMayara Messias Oliveira, Dionísio Pedro Amorim Neto, Anderson S. Sant’Ana · 2026 · Comprehensive Reviews in Food Science and Food Safety
- DNA Adductomics by mass tag prelabelingPoguang Wang, Elisabeth Roider, Michael E. Coulter, Christopher A. Walsh, Caitlin S. Kramer, Penny J. Beuning, Roger W. Giese · 2021 · Rapid Communications in Mass Spectrometry
- Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision RepairMarianna Genta, Giulia Ferrara, Riccardo Capelli, Diego Rondelli, Sarah Sertic, Martino Bolognesi, Menico Rizzi, Franca Rossi, David Jeruzalmi, Antonio Chaves-Sanjuán et al. · 2025 · Nature Communications
- Hymenobacter rubidus sp. nov., bacterium isolated from a soilJae‐Jin Lee, Eun Sun Joo, Eun Bit Kim, Seon Hwa Jeon, Sathiyaraj Srinivasan, Hee–Young Jung, Myung Kyum Kim · 2016 · Antonie van Leeuwenhoek
- Deinococcus persicinus sp. nov., a radiation-resistant bacterium from soilSeon Hwa Jeon, Myung-Suk Kang, Eun Sun Joo, Eun Bit Kim, Sangyong Lim, Sun-Wook Jeong, Hee–Young Jung, Sathiyaraj Srinivasan, Myung Kyum Kim · 2016 · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Mechanistic insight into the repair of C8-linked pyrrolobenzodiazepine monomer-mediated DNA damageAsha Mary Joseph, Kazi Sharmin Nahar, Saheli Daw, Md. Mahbub Hasan, Rebecca Lo, Tung B. K. Le, Khondaker Miraz Rahman, Anjana Badrinarayanan · 2022 · RSC Medicinal Chemistry
- Trans-dichlorooxovandium (IV) complex as a novel photoinducible DNA interstrand crosslinker for cancer therapyKumar Somyajit, Bhabatosh Banik, Sneha Saxena, Sharath Babu, Manoor Prakash Hande, Akhil Ranjan Chakravarty, Ganesh Nagaraju · 2015 · Carcinogenesis
- Interrogating the substrate specificity landscape of UvrC reveals novel insights into its non-canonical functionManoj Thakur, Rishikesh S. Parulekar, Sagar S. Barale, Kailas Dasharath Sonawane, Kalappa Muniyappa · 2022 · Biophysical Journal
- Deinococcus ruber sp. nov., a radiation-resistant bacterium isolated from soilEun Bit Kim, Myung-Suk Kang, Eun Sun Joo, Seon Hwa Jeon, Sun-Wook Jeong, Sang Yong Lim, Hee Young Jung, Sathiyaraj Srinivasan, Myung Kyum Kim · 2016 · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Ecological and functional capabilities of an uncultured Kordia sp.Marta Royo‐Llonch, Pablo Sánchez, José M. González, Carlos Pedrós‐Alió, Silvia G. Acinas · 2019 · Systematic and Applied Microbiology
- Methods to Study Transcription-Coupled Repair in ChromatinHélène Gaillard, Ralf Erik Wellinger, Andrés Aguilera · 2015 · Methods in molecular biology
- Nucleotide Excision Repair Pathway in MycobacteriaManoj Thakur, Kalappa Muniyappa · 2019 · Springer eBooks
- The Helicobacter pylori UvrC Nuclease Is Essential for Chromosomal Microimports after Natural TransformationFlorent Ailloud, Iratxe Estibariz, Gudrun Pfaffinger, Sebastian Suerbaum · 2022 · mBio
- An insight of oil protection theory: Survival, structural and metabolic adaptation of Salmonella enterica Enteritidis Phage Type 30 in three triglyceridesHuan Zhao, Rui Sun, Shidi Cao, Samet Ozturk, Ferruh Erdoğdu, Shuxiang Liu, Shuxiang Liu · 2025 · Food Microbiology
- Comparing Mfd- and UvrD-dependent models of transcription coupled DNA repair in live Escherichia coli using single-molecule trackingElżbieta Kaja, Donata Vijande, Justyna Kowalczyk, Michał Michalak, Jacek Gapiński, Carolin Martina Kobras, Philippa Rolfe, Mathew Stracy · 2024 · DNA repair
- Macrophage activation highlight an important role for NER proteins in the survival, latency and multiplication of Mycobacterium tuberculosisManoj Thakur, Kalappa Muniyappa · 2022 · Tuberculosis
- Understanding bias in DNA repairTerence R. Strick, Nigel J. Savery · 2017 · Proceedings of the National Academy of Sciences
- Transcriptional pausing to scout ahead for DNA damageBennett Van Houten, Caroline Kisker · 2014 · Proceedings of the National Academy of Sciences
- Genomic sequencing of a strain of Acinetobacter baumannii and potential mechanisms to antibiotics resistanceLei Zhao, Hongru Li, Ziwen Zhu, Mark R. Wakefield, Yujiang Fang, Ying Ye · 2017 · Infection Genetics and Evolution
- Synthesis, structure, and biological evaluation of a platinum‐carbazole conjugateYoung Cheun, Myong‐Chul Koag, Youssef Wahib Naguib, Hala Ouzon‐Shubeita, Zhengrong Cui, Danaya Pakotiprapha, Seongmin Lee · 2017 · Chemical Biology & Drug Design
- Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosisEdian F. Franco, Pratip Rana, Ana Lídia Q. Cavalcante, Artur Silva, Anne Cybelle Pinto Gomide, Adriana Ribeiro Carneiro, Vasco Azevedo, Preetam Ghosh, Rommel Thiago Jucá Ramos · 2020 · Genes
- Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathwaysKelsey S. Whinn, Antoine M. van Oijen, Harshad B. Ghodke · 2021 · DNA repair
- A tale of two cities: A tribute to Aziz Sancar's Nobel Prize in Chemistry for his molecular characterization of NERBennett Van Houten · 2016 · DNA repair
- Genome editing in Acinetobacter baumannii through enhanced natural transformationIlknur Yilmaz, Tülin Özbek · 2024 · Journal of Basic Microbiology
- A novel papillation assay for the identification of genes affecting mutation rate in Pseudomonas putida and other pseudomonadsMari Tagel, Kairi Tavita, Rita Hõrak, Maia Kivisaar, Heili Ilves · 2016 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
- Xeroderma Pigmentosum and Related DiseasesSteffen Schubert, Steffen Emmert · 2019 · Wiley eBooks
- Radiation ToleranceJohn R. Battista · 2016 · Encyclopedia of Life Sciences
- Helicases required for nucleotide excision repair: structure, function and mechanismFeng He, Marco Bravo, Li Fan · 2023 · The Enzymes
- In vivo nucleotide excision repair by mycobacterial UvrD1 requires ATP hydrolysis but does not depend on cysteine disulfide-mediated dimerization and DNA unwindingGarrett M. Warren, Stewart Shuman · 2025 · Nucleic Acids Research
- Rufibacter radiotolerans sp. nov., a novel gamma-radiation-resistant bacterium isolated from rice fieldMyung Kyum Kim, Sathiyaraj Srinivasan · 2020 · Archives of Microbiology
- Strategies and Methods of Transcription-Coupled Repair Studies In Vitro and In VivoVitaly Epshtein, Venu Kamarthapu, Evgeny Nudler · 2017 · Methods in enzymology on CD-ROM/Methods in enzymology
- Genome instability in pathogenesis of tuberculosisKehong Zhang, Yuping Ning, Fanhui Kong, Xinchun Chen, Yi Cai · 2021 · Genome Instability & Disease
- Characterization of the multifunctional XPG protein during Nucleotide-excision-repairSteffen Schubert · 2014
- Bacterial type 1A topoisomerases maintain the stability of the genome by preventing and dealing with R-loop-and nucleotide excision repair-dependent topological stressJulien Brochu, Émilie Vlachos-Breton, Marc Drolet · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Plant MutS Homolog 1 is a mismatch-directed nuclease required for organelle genome maintenanceAlejandro Peñafiel-Ayala, Chang Zhou, Noe Baruch‐Torres, Daniel B. Sloan, Shin‐ichi Arimura, Luis Gabriel Brieba · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Inhibition of Mycobacterium tuberculosis UvrB by small molecules: Potent NER disruption and structural insights into dimer conformationFarheen Jahan, Swati Anand, Sanjay Kumar, Ghanshyam Pandey, Mohammad Imran Siddiqi, Manju Yasoda Krishnan, Ravishankar Ramachandran · 2025 · International Journal of Biological Macromolecules
- UV disinfection and regrowth of antibiotic-resistant bacteria in wastewater: mechanistic insights and engineering implicationsFatemeh Hashemzadeh, Gopal Achari, Leland J. Jackson · 2026 · Environmental Reviews
- The physiology and biochemistry of oxidative stress in bacteriaSanjay Kumar Rohaun, James A. Imlay · 2026 · Advances in microbial physiology/Advances in Microbial Physiology
- DNA polymerase I: structure, activity, and function in bacterial DNA replication and repairFrances Caroline Lowder, Lyle A. Simmons · 2026 · Critical Reviews in Biochemistry and Molecular Biology
- Nucleotide excision repair and photoreactivation in sugarcane endophyte Gluconacetobacter diazotrophicus strain PAL5F M Rouws Luc, Carlos Henrique Salvino Gadêlha Meneses, S Hemerly Adriana, I Baldani Joseacute · 2013 · African Journal of Microbiology Research
- DNA Damage Repair in ArchaeaQunxin She, Xu Feng, Wenyuan Han · 2017 · Springer eBooks
- Adaptative transcriptional response of Dietzia cinnamea P4 strain to sunlight simulatorLuciano Procópio, Marcelo de Pádula, Jan Dirk van Elsas, Lucy Seldin · 2020 · Archives of Microbiology
- DNA Repair☆Yaroslava Y. Polosina · 2014 · Elsevier eBooks
- Functional relevance of spontaneous alternative splice variants of xeroderma pigmentosum genes: Prognostic marker for skin cancer risk and disease outcome?Janin Lehmann · 2017
- Comparative Genomics and Directed Evolution Reveal Genetic Determinants of Extreme UVC Radiation Tolerance in Bacteria Recovered from the StratosphereAdam J. Ellington, Tyler J. Schult, Christopher R. Reisch, Brent C. Christner · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Uracil/guanine mismatches trigger MutS HOMOLOG1-dependent mitochondrial DNA double-strand breaks in ArabidopsisChang Zhou, Alejandro Peñafiel-Ayala, Chuande Wang, Daniel B. Sloan, Luis Gabriel Brieba, Shin‐ichi Arimura · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Genome Instability in Bacteria and ArchaeaJan‐Erik Messling, Ashley B. Williams · 2016 · Elsevier eBooks
- Papel dos mecanismos de reparo de DNA na resposta de Pseudomonas aeruginosa aos antimicrobianos Cirprofloxacina e Ceftazidima.Letícia Busato Migliorini · 2018
- Estudo da síntese translesão em Caulobacter crescentus.Ingrid Reale Alves · 2018
- Control of gene expression through coupling of transcription and translationFlint Stevenson-Jones · 2017
- DNA damage and repairSubrata Pal · 2019 · Elsevier eBooks
- Mapping of DNA damage genome-wide at nucleotide resolution by circle-damage-sequencingSeung‐Gi Jin, Dean Pettinga, Jennifer S. Johnson, Gerd P. Pfeifer · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Caracterização de sistemas de reparo de lesões oxidativas e fotoprodutos de Caulobacter crescentusFrank S. Fernández‐Silva · 2019
- Listeria monocytogenes utilizes the ClpP1/2 proteolytic machinery for fine-tuned substrate degradation under heat stressDóra Balogh, Konstantin Eckel, Christian Fetzer, Stephan A. Sieber · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Genome instability in bacteria and archaea: Strategies for maintaining genome stabilityAndrey Golubov · 2021 · Elsevier eBooks
- Escherichia coli BarA-UvrY regulates the pks island and kills Staphylococci via the genotoxin colibactinJun Jie Wong, Kelvin Kian Long Chong, Foo Kiong Ho, Chee Meng Benjamin Ho, Ramesh Neelakandan, Pei Yi Choo, Damien Keogh, John Li Chen, Chuan‐Fa Liu, Kimberly A. Kline · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- The Mycobacterium tuberculosis DNA-repair helicase UvrD1 is activated by redox-dependent dimerization via a 2B domain cysteine conserved in other ActinobacteriaAnkita Chadda, Drake Jensen, Eric J. Tomko, Ana Ruiz Manzano, Binh Nguyen, Timothy M. Lohman, Eric A. Galburt · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Class II UvrA protein Ecm16 requires ATPase activity to render resistance against echinomycinAmanda Erlandson, Priyanka Gade, Chu‐Young Kim, Paola E. Mera · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Faculty Opinions recommendation of Protein structure. Direct observation of structure-function relationship in a nucleic acid-processing enzyme.Joyce H.G. Lebbink · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Requirement for specific bacterial genome maintenance pathways in repair of C8-linked pyrrolobenzodiazepine (PBD) bi-aryl monomer-mediated DNA damageAsha Mary Joseph, Kazi Sharmin Nahar, Saheli Daw, Md. Mahbub Hasan, Rebecca Lo, Tung B. K. Le, Khondaker Miraz Rahman, Anjana Badrinarayanan · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Investigating the Role of Holoenzyme C in Restoring Replication Following UV-Induced DNA Damage in Escherichia coliRahul Shimpi · 2023
- Deciphering Microbial Regulation of Heterogeneity and Drug Adaptation with Meta-transcriptomics and Other System-Level ToolsErick Tieu, Braden T Griebel, Braden Carroll, Anna Eydinova, Shuyi Ma · 2024 · Springer eBooks
- Structural snapshots of the mechanism of ATP-dependent DNA damage recognition by UvrAShivlee Nirwal, Mariusz Czarnocki‐Cieciura, Weronika Zajko, Krzysztof J. Skowronek, Roman H. Szczepanowski, Marcin Nowotny · 2025 · Nature Communications
- Roles of Alp and Prt Regulons in the Response of Pseudomonas aeruginosa to UV ‐C LightM. A. S. Fonseca, Renatta S. Oliveira, Henrique Kustor, Rúbia R. Freitas, Enzo Breviglieri Sichi Mello, Cristina E. Alvarez‐Martinez, Rodrigo S. Galhardo · 2026 · Environmental Microbiology Reports
- Régulation de la réponse à divers stress et réparation des cassures double brin de l’ADN chez la bactérie Deinococcus radioduransLaura Meyer · 2018
- Nucleotide Excision Repair : New Approaches to investigate its exceptionally broad substrate specificityAnna Seck · 2021 · HAL
- Single molecule nanomanipulation based analysis of DNA mismatch repairKateryna Nitsenko · 2020
- Mechanisms facilitating the dissemination of multidrug resistance plasmidsMinjia Shen · 2023
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- The SOS response acts as a regulatory switch that balances helicase anti-recombination with transcription–replication conflict resolution activities in Escherichia coliSébastien Fleurier, Ivan Matić · 2026 · G3 Genes Genomes Genetics
- Bulky lesions on the displaced strand stimulate DNA unwinding by dimeric UvrD-family helicasesEric J. Tomko, Ankita Chadda, Eric A. Galburt · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
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