Prokaryotic Nucleotide Excision Repair

Kisker, C., Kuper, J., Van Houten, B.·2013·Cold Spring Harbor Perspectives in Biology

Cited by (191)

Items 101–191 of 191

  1. Movement of the β-hairpin in the third zinc-binding module of UvrA is required for DNA damage recognition
    Thanyalak Kraithong, Ketsaraphorn Channgam, Ornchuma Itsathitphaisarn, Montip Tiensuwan, David Jeruzalmi, Danaya Pakotiprapha · 2017 · DNA repair
  2. The Genetic Determinants of Extreme UV Radiation and Desiccation Tolerance in a Bacterium Recovered from the Stratosphere
    Adam J. Ellington, Tyler J. Schult, Christopher R. Reisch, Brent C. Christner · 2025 · Microorganisms
  3. A framework predicting removal efficacy of antibiotic resistance genes during disinfection processes with machine learning
    Ruixing Huang, Chengxue Ma, Xiaoliu Huangfu, Jun Ma · 2025 · Journal of Hazardous Materials
  4. Identification of Escherichia coli ygaQ and rpmG as novel mitomycin C resistance factors implicated in DNA repair
    Edward L. Bolt, Tabitha Jenkins, Valeria Moreira Russo, Sharlene Ahmed, James R. Cavey, Simon Cass · 2015 · Bioscience Reports
  5. Real-time investigation of the roles of ATP hydrolysis by UvrA and UvrB during DNA damage recognition in nucleotide excision repair
    Thanyalak Kraithong, Jeerus Sucharitakul, Chittanon Buranachai, David Jeruzalmi, Pimchai Chaiyen, Danaya Pakotiprapha · 2020 · DNA repair
  6. Listeria monocytogenes utilizes the ClpP1/2 proteolytic machinery for fine-tuned substrate degradation at elevated temperatures
    Dóra Balogh, Konstantin Eckel, Christian Fetzer, Stephan A. Sieber · 2022 · RSC Chemical Biology
  7. Deciphering the essentiality and function of SxSx motif in Mycobacterium tuberculosis UvrB
    Manoj Thakur, Kalappa Muniyappa · 2020 · Biochimie
  8. Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams
    Shigeru Shimamura, Takashi Kaneko, Genki Ozawa, Mamiko Nishino Matsumoto, Takeru Koshiishi, Yoshihiro Takaki, Chiaki Kato, Ken Takai, Takao Yoshida, Katsunori Fujikura et al. · 2017 · PLoS ONE
  9. Genome assembly of Chryseobacterium sp. strain IHBB 10212 from glacier top-surface soil in the Indian trans-Himalayas with potential for hydrolytic enzymes
    Mohinder Pal, Mohit Kumar Swarnkar, Hena Dhar, Sanjay Chhibber, Arvind Gulati · 2017 · Genomics Data
  10. Global genome and transcription-coupled nucleotide excision repair pathway in prokaryotes
    Manoj Thakur, Kalappa Muniyappa · 2023 · Journal of Biosciences
  11. Real-time single-molecule visualization using DNA curtains reveals the molecular mechanisms underlying DNA repair pathways
    Subin Kim, Youngseo Kim, Ja Yil Lee · 2023 · DNA repair
  12. Spatial coupling between DNA replication and mismatch repair in Caulobacter crescentus
    Tiancong Chai, Céline Terrettaz, Justine Collier · 2021 · Nucleic Acids Research
  13. Insight into Single-Molecule Imaging Techniques for the Study of Prokaryotic Genome Maintenance
    Nischal Sharma, A. V. van Oijen, Lisanne M. Spenkelink, Stefan H. Mueller · 2024 · Chemical & Biomedical Imaging
  14. Cellular Responses to Aflatoxin-Associated DNA Adducts
    Michael Fasullo · 2019 · IntechOpen eBooks
  15. The bile salt deoxycholate induces Campylobacter jejuni genetic point mutations that promote increased antibiotic resistance and fitness
    Prabhat Kumar Talukdar, Torin M. Crockett, Lisa M. Gloss, Steven Huynh, Steven A. Roberts, Kyrah L. Turner, S. Lewis, Tristin Herup-Wheeler, Craig Thomas Parker, Michael E. Konkel · 2022 · Frontiers in Microbiology
  16. Excision of the doubly methylated base N 4 ,5-dimethylcytosine from DNA by Escherichia coli Nei and Fpg proteins
    Marina Alexeeva, Prashanna Guragain, Almaz Nigatu Tesfahun, Miglė Tomkuvienė, Aysha Arshad, Rūta Gerasimaitė, Audronė Rukšėnaitė, Giedrė Urbanavičiūtė, Magnar Bjørås, Jon K. Laerdahl et al. · 2018 · Philosophical Transactions of the Royal Society B Biological Sciences
  17. How Salmonella Works Under Osmotic and Desiccation Stresses
    Mayara Messias Oliveira, Dionísio Pedro Amorim Neto, Anderson S. Sant’Ana · 2026 · Comprehensive Reviews in Food Science and Food Safety
  18. DNA Adductomics by mass tag prelabeling
    Poguang Wang, Elisabeth Roider, Michael E. Coulter, Christopher A. Walsh, Caitlin S. Kramer, Penny J. Beuning, Roger W. Giese · 2021 · Rapid Communications in Mass Spectrometry
  19. Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair
    Marianna Genta, Giulia Ferrara, Riccardo Capelli, Diego Rondelli, Sarah Sertic, Martino Bolognesi, Menico Rizzi, Franca Rossi, David Jeruzalmi, Antonio Chaves-Sanjuán et al. · 2025 · Nature Communications
  20. Hymenobacter rubidus sp. nov., bacterium isolated from a soil
    Jae‐Jin Lee, Eun Sun Joo, Eun Bit Kim, Seon Hwa Jeon, Sathiyaraj Srinivasan, Hee–Young Jung, Myung Kyum Kim · 2016 · Antonie van Leeuwenhoek
  21. Deinococcus persicinus sp. nov., a radiation-resistant bacterium from soil
    Seon Hwa Jeon, Myung-Suk Kang, Eun Sun Joo, Eun Bit Kim, Sangyong Lim, Sun-Wook Jeong, Hee–Young Jung, Sathiyaraj Srinivasan, Myung Kyum Kim · 2016 · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
  22. Mechanistic insight into the repair of C8-linked pyrrolobenzodiazepine monomer-mediated DNA damage
    Asha Mary Joseph, Kazi Sharmin Nahar, Saheli Daw, Md. Mahbub Hasan, Rebecca Lo, Tung B. K. Le, Khondaker Miraz Rahman, Anjana Badrinarayanan · 2022 · RSC Medicinal Chemistry
  23. Trans-dichlorooxovandium (IV) complex as a novel photoinducible DNA interstrand crosslinker for cancer therapy
    Kumar Somyajit, Bhabatosh Banik, Sneha Saxena, Sharath Babu, Manoor Prakash Hande, Akhil Ranjan Chakravarty, Ganesh Nagaraju · 2015 · Carcinogenesis
  24. Interrogating the substrate specificity landscape of UvrC reveals novel insights into its non-canonical function
    Manoj Thakur, Rishikesh S. Parulekar, Sagar S. Barale, Kailas Dasharath Sonawane, Kalappa Muniyappa · 2022 · Biophysical Journal
  25. Deinococcus ruber sp. nov., a radiation-resistant bacterium isolated from soil
    Eun Bit Kim, Myung-Suk Kang, Eun Sun Joo, Seon Hwa Jeon, Sun-Wook Jeong, Sang Yong Lim, Hee Young Jung, Sathiyaraj Srinivasan, Myung Kyum Kim · 2016 · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
  26. Ecological and functional capabilities of an uncultured Kordia sp.
    Marta Royo‐Llonch, Pablo Sánchez, José M. González, Carlos Pedrós‐Alió, Silvia G. Acinas · 2019 · Systematic and Applied Microbiology
  27. Methods to Study Transcription-Coupled Repair in Chromatin
    Hélène Gaillard, Ralf Erik Wellinger, Andrés Aguilera · 2015 · Methods in molecular biology
  28. Nucleotide Excision Repair Pathway in Mycobacteria
    Manoj Thakur, Kalappa Muniyappa · 2019 · Springer eBooks
  29. The Helicobacter pylori UvrC Nuclease Is Essential for Chromosomal Microimports after Natural Transformation
    Florent Ailloud, Iratxe Estibariz, Gudrun Pfaffinger, Sebastian Suerbaum · 2022 · mBio
  30. An insight of oil protection theory: Survival, structural and metabolic adaptation of Salmonella enterica Enteritidis Phage Type 30 in three triglycerides
    Huan Zhao, Rui Sun, Shidi Cao, Samet Ozturk, Ferruh Erdoğdu, Shuxiang Liu, Shuxiang Liu · 2025 · Food Microbiology
  31. Comparing Mfd- and UvrD-dependent models of transcription coupled DNA repair in live Escherichia coli using single-molecule tracking
    Elżbieta Kaja, Donata Vijande, Justyna Kowalczyk, Michał Michalak, Jacek Gapiński, Carolin Martina Kobras, Philippa Rolfe, Mathew Stracy · 2024 · DNA repair
  32. Macrophage activation highlight an important role for NER proteins in the survival, latency and multiplication of Mycobacterium tuberculosis
    Manoj Thakur, Kalappa Muniyappa · 2022 · Tuberculosis
  33. Understanding bias in DNA repair
    Terence R. Strick, Nigel J. Savery · 2017 · Proceedings of the National Academy of Sciences
  34. Transcriptional pausing to scout ahead for DNA damage
    Bennett Van Houten, Caroline Kisker · 2014 · Proceedings of the National Academy of Sciences
  35. Genomic sequencing of a strain of Acinetobacter baumannii and potential mechanisms to antibiotics resistance
    Lei Zhao, Hongru Li, Ziwen Zhu, Mark R. Wakefield, Yujiang Fang, Ying Ye · 2017 · Infection Genetics and Evolution
  36. Synthesis, structure, and biological evaluation of a platinum‐carbazole conjugate
    Young Cheun, Myong‐Chul Koag, Youssef Wahib Naguib, Hala Ouzon‐Shubeita, Zhengrong Cui, Danaya Pakotiprapha, Seongmin Lee · 2017 · Chemical Biology & Drug Design
  37. Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis
    Edian F. Franco, Pratip Rana, Ana Lídia Q. Cavalcante, Artur Silva, Anne Cybelle Pinto Gomide, Adriana Ribeiro Carneiro, Vasco Azevedo, Preetam Ghosh, Rommel Thiago Jucá Ramos · 2020 · Genes
  38. Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathways
    Kelsey S. Whinn, Antoine M. van Oijen, Harshad B. Ghodke · 2021 · DNA repair
  39. A tale of two cities: A tribute to Aziz Sancar's Nobel Prize in Chemistry for his molecular characterization of NER
    Bennett Van Houten · 2016 · DNA repair
  40. Genome editing in Acinetobacter baumannii through enhanced natural transformation
    Ilknur Yilmaz, Tülin Özbek · 2024 · Journal of Basic Microbiology
  41. A novel papillation assay for the identification of genes affecting mutation rate in Pseudomonas putida and other pseudomonads
    Mari Tagel, Kairi Tavita, Rita Hõrak, Maia Kivisaar, Heili Ilves · 2016 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
  42. Xeroderma Pigmentosum and Related Diseases
    Steffen Schubert, Steffen Emmert · 2019 · Wiley eBooks
  43. Radiation Tolerance
    John R. Battista · 2016 · Encyclopedia of Life Sciences
  44. Helicases required for nucleotide excision repair: structure, function and mechanism
    Feng He, Marco Bravo, Li Fan · 2023 · The Enzymes
  45. In vivo nucleotide excision repair by mycobacterial UvrD1 requires ATP hydrolysis but does not depend on cysteine disulfide-mediated dimerization and DNA unwinding
    Garrett M. Warren, Stewart Shuman · 2025 · Nucleic Acids Research
  46. Rufibacter radiotolerans sp. nov., a novel gamma-radiation-resistant bacterium isolated from rice field
    Myung Kyum Kim, Sathiyaraj Srinivasan · 2020 · Archives of Microbiology
  47. Strategies and Methods of Transcription-Coupled Repair Studies In Vitro and In Vivo
    Vitaly Epshtein, Venu Kamarthapu, Evgeny Nudler · 2017 · Methods in enzymology on CD-ROM/Methods in enzymology
  48. Genome instability in pathogenesis of tuberculosis
    Kehong Zhang, Yuping Ning, Fanhui Kong, Xinchun Chen, Yi Cai · 2021 · Genome Instability & Disease
  49. Characterization of the multifunctional XPG protein during Nucleotide-excision-repair
    Steffen Schubert · 2014
  50. Bacterial type 1A topoisomerases maintain the stability of the genome by preventing and dealing with R-loop-and nucleotide excision repair-dependent topological stress
    Julien Brochu, Émilie Vlachos-Breton, Marc Drolet · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  51. Plant MutS Homolog 1 is a mismatch-directed nuclease required for organelle genome maintenance
    Alejandro Peñafiel-Ayala, Chang Zhou, Noe Baruch‐Torres, Daniel B. Sloan, Shin‐ichi Arimura, Luis Gabriel Brieba · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  52. Inhibition of Mycobacterium tuberculosis UvrB by small molecules: Potent NER disruption and structural insights into dimer conformation
    Farheen Jahan, Swati Anand, Sanjay Kumar, Ghanshyam Pandey, Mohammad Imran Siddiqi, Manju Yasoda Krishnan, Ravishankar Ramachandran · 2025 · International Journal of Biological Macromolecules
  53. UV disinfection and regrowth of antibiotic-resistant bacteria in wastewater: mechanistic insights and engineering implications
    Fatemeh Hashemzadeh, Gopal Achari, Leland J. Jackson · 2026 · Environmental Reviews
  54. The physiology and biochemistry of oxidative stress in bacteria
    Sanjay Kumar Rohaun, James A. Imlay · 2026 · Advances in microbial physiology/Advances in Microbial Physiology
  55. DNA polymerase I: structure, activity, and function in bacterial DNA replication and repair
    Frances Caroline Lowder, Lyle A. Simmons · 2026 · Critical Reviews in Biochemistry and Molecular Biology
  56. Nucleotide excision repair and photoreactivation in sugarcane endophyte Gluconacetobacter diazotrophicus strain PAL5
    F M Rouws Luc, Carlos Henrique Salvino Gadêlha Meneses, S Hemerly Adriana, I Baldani Joseacute · 2013 · African Journal of Microbiology Research
  57. DNA Damage Repair in Archaea
    Qunxin She, Xu Feng, Wenyuan Han · 2017 · Springer eBooks
  58. Adaptative transcriptional response of Dietzia cinnamea P4 strain to sunlight simulator
    Luciano Procópio, Marcelo de Pádula, Jan Dirk van Elsas, Lucy Seldin · 2020 · Archives of Microbiology
  59. DNA Repair☆
    Yaroslava Y. Polosina · 2014 · Elsevier eBooks
  60. Functional relevance of spontaneous alternative splice variants of xeroderma pigmentosum genes: Prognostic marker for skin cancer risk and disease outcome?
    Janin Lehmann · 2017
  61. Comparative Genomics and Directed Evolution Reveal Genetic Determinants of Extreme UVC Radiation Tolerance in Bacteria Recovered from the Stratosphere
    Adam J. Ellington, Tyler J. Schult, Christopher R. Reisch, Brent C. Christner · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  62. Uracil/guanine mismatches trigger MutS HOMOLOG1-dependent mitochondrial DNA double-strand breaks in Arabidopsis
    Chang Zhou, Alejandro Peñafiel-Ayala, Chuande Wang, Daniel B. Sloan, Luis Gabriel Brieba, Shin‐ichi Arimura · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  63. Genome Instability in Bacteria and Archaea
    Jan‐Erik Messling, Ashley B. Williams · 2016 · Elsevier eBooks
  64. Papel dos mecanismos de reparo de DNA na resposta de Pseudomonas aeruginosa aos antimicrobianos Cirprofloxacina e Ceftazidima.
    Letícia Busato Migliorini · 2018
  65. Estudo da síntese translesão em Caulobacter crescentus.
    Ingrid Reale Alves · 2018
  66. Control of gene expression through coupling of transcription and translation
    Flint Stevenson-Jones · 2017
  67. DNA damage and repair
    Subrata Pal · 2019 · Elsevier eBooks
  68. Mapping of DNA damage genome-wide at nucleotide resolution by circle-damage-sequencing
    Seung‐Gi Jin, Dean Pettinga, Jennifer S. Johnson, Gerd P. Pfeifer · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  69. Caracterização de sistemas de reparo de lesões oxidativas e fotoprodutos de Caulobacter crescentus
    Frank S. Fernández‐Silva · 2019
  70. Listeria monocytogenes utilizes the ClpP1/2 proteolytic machinery for fine-tuned substrate degradation under heat stress
    Dóra Balogh, Konstantin Eckel, Christian Fetzer, Stephan A. Sieber · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  71. Genome instability in bacteria and archaea: Strategies for maintaining genome stability
    Andrey Golubov · 2021 · Elsevier eBooks
  72. Escherichia coli BarA-UvrY regulates the pks island and kills Staphylococci via the genotoxin colibactin
    Jun Jie Wong, Kelvin Kian Long Chong, Foo Kiong Ho, Chee Meng Benjamin Ho, Ramesh Neelakandan, Pei Yi Choo, Damien Keogh, John Li Chen, Chuan‐Fa Liu, Kimberly A. Kline · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  73. The Mycobacterium tuberculosis DNA-repair helicase UvrD1 is activated by redox-dependent dimerization via a 2B domain cysteine conserved in other Actinobacteria
    Ankita Chadda, Drake Jensen, Eric J. Tomko, Ana Ruiz Manzano, Binh Nguyen, Timothy M. Lohman, Eric A. Galburt · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  74. Class II UvrA protein Ecm16 requires ATPase activity to render resistance against echinomycin
    Amanda Erlandson, Priyanka Gade, Chu‐Young Kim, Paola E. Mera · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  75. Faculty Opinions recommendation of Protein structure. Direct observation of structure-function relationship in a nucleic acid-processing enzyme.
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  76. Requirement for specific bacterial genome maintenance pathways in repair of C8-linked pyrrolobenzodiazepine (PBD) bi-aryl monomer-mediated DNA damage
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  77. Investigating the Role of Holoenzyme C in Restoring Replication Following UV-Induced DNA Damage in Escherichia coli
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  78. Deciphering Microbial Regulation of Heterogeneity and Drug Adaptation with Meta-transcriptomics and Other System-Level Tools
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  79. Structural snapshots of the mechanism of ATP-dependent DNA damage recognition by UvrA
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  80. Roles of Alp and Prt Regulons in the Response of Pseudomonas aeruginosa to UV ‐C Light
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  81. Régulation de la réponse à divers stress et réparation des cassures double brin de l’ADN chez la bactérie Deinococcus radiodurans
    Laura Meyer · 2018
  82. Nucleotide Excision Repair : New Approaches to investigate its exceptionally broad substrate specificity
    Anna Seck · 2021 · HAL
  83. Single molecule nanomanipulation based analysis of DNA mismatch repair
    Kateryna Nitsenko · 2020
  84. Mechanisms facilitating the dissemination of multidrug resistance plasmids
    Minjia Shen · 2023
  85. Molecular Dissection of the UvrC Protein Involved in Nucleotide Excision Repair in Listeria monocytogenes
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  89. Bulky lesions on the displaced strand stimulate DNA unwinding by dimeric UvrD-family helicases
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  90. Taxonomic Identification and Functional Prediction of UV-Tolerant Bacteria in the Candelaria Desert, Colombia
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  91. Deleting the 2B domain of mycobacterial UvrD1 unmasks a latent helicase activity in vitro but effaces UvrD1 activity in nucleotide excision repair in vivo
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