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A decade of 3C technologies: insights into nuclear organization

Open access
de Wit, Elzo, de Laat, Wouter·2012·Genes & Development

Abstract

Over the past 10 years, the development of chromosome conformation capture (3C) technology and the subsequent genomic variants thereof have enabled the analysis of nuclear organization at an unprecedented resolution and throughput. The technology relies on the original and, in hindsight, remarkably simple idea that digestion and religation of fixed chromatin in cells, followed by the quantification of ligation junctions, allows for the determination of DNA contact frequencies and insight into chromosome topology. Here we evaluate and compare the current 3C-based methods (including 4C [chromosome conformation capture-on-chip], 5C [chromosome conformation capture carbon copy], HiC, and ChIA-PET), summarize their contribution to our current understanding of genome structure, and discuss how shape influences genome function.

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Metadata

Authors
de Wit, E., & de Laat, W.
Venue
Genes & Development
Published
2012-01-01
Volume
26
Issue
1
Pages
11-24
ISSN
  • 0890-9369 (ISSN-L)
  • 1549-5477
OpenAlex
W1945579058
Cited by
712
References
16
Type
posted content
Language
en
Open access
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CoChat. (2026). Citation check: A decade of 3C technologies: insights into nuclear organization. https://app.cochat.ai/papers/10.1101/gad.179804.111
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de Wit, E., & de Laat, W. (2012). A decade of 3C technologies: insights into nuclear organization. Genes & Development. https://doi.org/10.1101/gad.179804.111

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