Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
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Items 301–384 of 384
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- Crosstalk between CpG Methylation and Polymorphisms (CpG-SNPs) in the Promotor Region of DIO2 in Kashin-Beck DiseaseR Zhang, Dandan Zhang, Di Zhang, Xiaoli Yang, Qiang Li, Chen Wang, Yang Xuena, Xiong Yongmin · 2022 · Chinese Medical Sciences Journal
- Screening for SNPs with Allele-Specific Methylation Based on Next-Generation Sequencing DataBo Hu, Yuan Ji, Yaomin Xu, Angela H. Ting · 2013 · Statistics in Biosciences
- References for Haplotype Imputation in the Big Data EraWenzhi Li, Wei Xu, Qiling Li · 2015 · Molecular Biology
- Differentially methylated regions and methylation QTLs for teen depression and early puberty in the Fragile Families Child Wellbeing StudyRoberta De Vito, Isabella N. Grabski, Derek Aguiar, Lisa M. Schneper, Archit Verma, Juan Castillo Fernandez, Colter M. Mitchell, Jordana T. Bell, Sara McLanahan, Daniel A. Notterman et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- DNA co-methylation has a stable structure and is related to specific aspects of genome regulationSarah Watkins, Matthew J Suderman, Gibran Hemani, Kimberly Burrows, Debbie A. Lawlor, Jane West, Kathryn Willan, Nicholas John Timpson, Josine L. Min, Tom R. Gaunt · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- DNA methylation heterogeneity in complex tumor microenvironment: Quantitative methods, influencing factors, and clinical implicationsYongle Xu, Shuangyue Ma, Manyi Xu, Hongbo Zhu, Yuncong Wang, Wenbo Dong, Jing Gan, Zhao Yusen, Xinrong Li, Shuangshuang Wang et al. · 2025 · Genes & Diseases
- Pharmacoepigenomics in Personalized Medicine: A Hypothesis-Generating Approach to Introduce CpG-PGx SNPs as New Candidates for a Systematic Insight into Genomic-Epigenomic-Phenomic-Pharmacogenomics (G-E-Ph-PGx) AxisA. Sharafshah, Kenneth Blum, K. Lewandrowski, I. Elman, Brian S. Fuehrlein, David Baron, A. Pinhasov, Panayotis K. Thanos, R. Fiorelli, S. Schmidt et al. · 2025 · Journal of Personalized Medicine
- Multi-omics analyses identify potential epigenetic loci associated with survival in amyotrophic lateral sclerosis across diverse populationsYuqi Gu, Yan Chen, Tang Xuelin, Jingyan Guo, Jiali Hu, Wanli Yang, Jiahao Li, Xi Chen, Dongsheng Fan, Guo‐Bo Chen et al. · 2025 · EBioMedicine
- Haplotypes of CpG-related SNPs and associations with DNA methylation patternsYiyi Ma, Caren E. Smith, Yu‐Chi Lee, Laurence D. Parnell, Chao‐Qiang Lai, José María Ordovás · 2015 · Cambridge University Press eBooks
- Fundamentals of ProteomicsXuhua Xia · 2018 · Springer eBooks
- Lung Cancer: Genetic SusceptibilityAri P. Hirvonen · 2014 · Springer eBooks
- Identifying key DNA methylation sites and their cis-methylation quantitative loci for intramuscular fatty acid traits using genome and methylome data in Yorkshire pigsQi Shen, Kai Wang, Shujie Wang, Zhenjian Zhao, Xiang Ji, Dong Chen, Yang Yu, Shengdi Cui, Junge Wang, Ziyang Chen et al. · 2023 · Italian Journal of Animal Science
- Personalized EpigeneticsHehuang Xie · 2015 · Elsevier eBooks
- Interindividual Variability of DNA MethylationLouis Patrick Watanabe, Nicole C. Riddle · 2015 · Elsevier eBooks
- The Role of the Genetic Code in the DNA Methylation Landscape FormationHolger Heyn · 2015 · Elsevier eBooks
- Constructing Hepitypes: Phasing Local Genotype and DNA MethylationWen‐Yu Chung, Robert J. Schmitz, Tanya Biorac, Delia Ye, Miroslav Dudas, Gavin D. Meredith, Christopher C. Adams, Joseph R. Ecker, Michael Q. Zhang · 2013 · Journal of Neuroscience and Neuroengineering
- A Long Polymorphic GT Microsatellite within a Gene Promoter Mediates Non-Imprinted Allele-Specific DNA Methylation of a CpG Island in a Goldfish Inter-Strain HybridJianbo Zheng, Haomang Xu, Huiwen Cao · 2019 · International Journal of Molecular Sciences
- Development of a Method for Identifying and Functionally Analyzing Allele-Specific DNA Methylation Based on BS-Seq DataJiang Zhu, Mu Su, Yue Gu, Xingda Zhang, Wenhua Lv, Shumei Zhang, Zhongyi Sun, Haibo Lu, Yan Zhang · 2019 · Epigenomics
- Natural Selection on Exonic SNPs Shapes Allelic Expression Imbalance (AEI) Adaptability in Lung Cancer ProgressionJinfei Huang, Yuchao Zhang, Qingyang Ma, Yuhang Zhang, Meng Wang, You Lang Zhou, Zhihao Xing, Meiling Jin, Landian Hu, Xiangyin Kong · 2020 · Frontiers in Genetics
- Epigenetic mechanisms of asthma and allergyNathalie Acevedo · 2015 · Figshare
- CpG traffic lights are markers of regulatory regions in humansAbdullah M. Khamis, Anna V. Lioznova, Artem V. Artemov, Vasily E. Ramensky, Vladimir B. Bajić, Yulia A. Medvedeva · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
- Epigenetics in mental and neurodegenerative disordersIatrou · 2018 · Research Publications (Maastricht University)
- Allelic expression imbalance of PIK3CA mutations is frequent in breast cancer and prognostically significantLizelle Correia, Joana M. Xavier, Ramiro Magno, Bernardo P. de Almeida, Filipa Esteves, Isabel Duarte, Matthew Eldridge, Chong Sun, Astrid Bosma, Lorenza Mittempergher et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Expanded map of genomic imprinting reveals insight into human diseaseCraig Smail, Warren Cheung, Boryana S. Koseva, Adam F. Johnson, Chengpeng Bi, Carl F. Schreck, Michael L. Lydic, Kristin Holoch, Elena A. Repnikova, John C. Herriges et al. · 2025 · medRxiv
- Blood DNA methylation biomarkers for breast cancer riskKevin Brennan · 2013 · Spiral (Imperial College London)
- Investigation of DNA methylation in type 2 diabetes genetic risk lociBjörn Þór Aðalsteinsson · 2012
- Epidemiology of childhood germ cell tumors (GCT): epigenome-wide methylation, differential MiRNA expression, and catchment quality of the CCRNJessica R.B. Musselman · 2013 · University of Minnesota Digital Conservancy (University of Minnesota)
- Age-related methylation profiles of equine blood leukocytes in the RNASEL locusTomasz Ząbek, E. Semik, Tomasz Szmatoła, Bernadetta Oklejewicz, Agnieszka Fornal, Monika Bugno‐Poniewierska · 2015 · Journal of Applied Genetics
- Genetic Variants Associated with DNA methylationFan Wang, M Zhang, Wen Y.H, Zhang S.J · 2015 · Cancer Genetics and Epigenetics
- METHOD Open AccessLasse Maretty, Jonas A. Sibbesen, Anders Krogh · 2014
- Epigenetic Epidemiology of CancerAngela Risch, Narek Sarkisyan, David Scherf, Hanna Jacobsson, Wolfgang Hagmann, Christoph Plass · 2011 · Springer eBooks
- Veränderungen der DNA-Methylierung bei männlicher InfertilitätCarolin Friemel · 2015 · Multimedialen Archiv und Publikationsserver der Christian-Albrechts-Universität zu Kiel (Christian-Albrechts-Universität zu Kiel)
- Genetic-epigenetic Interactions: Sequence-dependent and Independent DNA NethylationCarolyn Ptak · 2013 · TSpace (University of Toronto)
- Introduction to genome-wide association studies and personalized medicineKrishnarao Appasani, Raghu Kiran Appasani · 2015 · Cambridge University Press eBooks
- Two �??Detailed views�?? on X chromosome inactivationRu Hong · 2016
- Discovery of problematic probes in illumina DNA methylation microarraysY. Ann Chen · 2015 · TSpace (University of Toronto)
- Measuring CpG Methylation by SMRT SequencingYuta Suzuki, Jonas Korlach, Shinichi Morishita · 2017 · Elsevier eBooks
- Contribution of genetic variation and developmental stage to methylome dynamics in myeloid differentiationXiang 'Anthony' Chen, Yiping Fan, Jinjun Cheng, Beisi Xu, Yong‐Dong Wang, Donald Albert Yergeau, John B. Easton, James R. Downing, Jinghui Zhang · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- Functional genomics of the VNN1 geneLuke A. Diepeveen · 2013 · UWA Profiles and Research Repository (UWA)
- Continuous gene flow contributes to low global species abundance and distribution of a marine model diatomAchal Rastogi, Anne-Flore Deton-Cabanillas, Fabio Rocha Jimenez Vieira, Alaguraj Veluchamy, Catherine Cantrel, Gaohong Wang, Pieter Vanormelingen, Chris Bowler, Gwenaël Piganeau, Leı̈la Tirichine et al. · 2017 · King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)
- Genomic Region Detection via Spatial Convex ClusteringJohn Nagorski, Genevera I. Allen · 2016 · arXiv (Cornell University)
- The Pharmacoepigenomics Informatics Pipeline and H-GREEN Hi-C Compiler: Discovering Pharmacogenomic Variants and Pathways with the Epigenome and Spatial GenomeAri Allyn-Feuer · 2018 · Deep Blue (University of Michigan)
- DNA Methylation of Repeat Regions in Human Cancer and Metabolic DiseaseHaley L. Cash · 2011
- States of Allelic Imbalance on the X Chromosomes in Human FemalesKaterina S. Kucera · 2011 · DukeSpace (Duke University)
- Lung Cancer: Genetic SusceptibilityAri P. Hirvonen · 2020 · Springer eBooks
- Advances in Single Molecule, Real-Time (SMRT) SequencingAdam Ameur, Matthew S. Hestand · 2019 · MDPI eBooks
- NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA moleculeHailu Fu, Haizi Zheng, Xiaoting Chen, Matthew T. Weirauch, Louis J. Muglia, Li Wang, Yaping Liu · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- The genomics of placenta evolution in livebearing fishHenri van Kruistum · 2022
- Illumina HumanMethylation BeadChip for Genome-Wide DNA Methylation Profiling: Advantages and LimitationsKazuhiko Nakabayashi · 2017 · Springer eBooks
- Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolutionBo Yan, Duan Wang, Romualdas Vaisvila, Zhiyi Sun, Laurence M. Ettwiller · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Simultaneous mapping of epigenetic inter-haplotype, inter-cell and inter-individual variation via the discovery of jointly regulated CpGs in pooled sequencing dataBenjamin Planterose Jiménez, Brontë Kolar, Manfred Kayser, Athina Vidaki · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Additional file 5 of Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNAHuanwen Wu, Shiwei Guo, Xiaoding Liu, Yatong Li, Zhixi Su, Qiye He, Xiaoqian Liu, Zhiwen Zhang, Lianyuan Yu, Xiaohan Shi et al. · 2022 · Figshare
- Additional file 3 of Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNAHuanwen Wu, Shiwei Guo, Xiaoding Liu, Yatong Li, Zhixi Su, Qiye He, Xiaoqian Liu, Zhiwen Zhang, Lianyuan Yu, Xiaohan Shi et al. · 2022 · Figshare
- Additional file 4 of Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNAHuanwen Wu, Shiwei Guo, Xiaoding Liu, Yatong Li, Zhixi Su, Qiye He, Xiaoqian Liu, Zhiwen Zhang, Lianyuan Yu, Xiaohan Shi et al. · 2022 · Figshare
- Beyond the “Dominant” and “Recessive” Patterns of InheritanceAnthoula Chatzikyriakidou · 2024 · International Journal of Molecular Sciences
- CpG Traffic Lights Are Involved in Active DNA DemethylationAnna V. Lioznova, Yu. A. Medvedeva · 2024 · Molecular Biology
- Admixture influences the genetic architecture of DNA methylation in a wild primate hybrid zoneTauras P. Vilgalys, Jordan A. Anderson, Arielle S. Fogel, Dana Lin, Elizabeth A. Archie, Susan C. Alberts, Jenny Tung · 2026 · Genome biology
- The role of DNA methylation in the regulation of HLA expressionAdam Strnad, Martin Petřek · 2025 · Biomedical Papers
- Additional file 1 of DAMEfinder: a method to detect differential allele-specific methylationStephany Orjuela, Dania Machlab, Mirco Menigatti, Giancarlo Marra, Mark D. Robinson · 2020 · Figshare
- Additional file 3 of NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA moleculeFu, Hailu, Zheng, Haizi, Chen, Xiaoting, Matthew T. Weirauch, Muglia, Louis J., Li Wang, Yaping Liu · 2024 · Figshare
- Additional file 5 of Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart diseaseMing Li, Chen Lyu, Manyan Huang, Catherine Do, Benjamin Tycko, Philip J. Lupo, Stewart L Macleod, Christopher E. Randolph, Nianjun Liu, John S. Witte et al. · 2021 · Figshare
- Additional file 3 of Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart diseaseMing Li, Chen Lyu, Manyan Huang, Catherine Do, Benjamin Tycko, Philip J. Lupo, Stewart L Macleod, Christopher E. Randolph, Nianjun Liu, John S. Witte et al. · 2021 · Figshare
- Additional file 2 of Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNAWu, Huanwen, Guo, Shiwei, Liu, Xiaoding, Yatong Li, Su, Zhixi, He, Qiye, Liu, Xiaoqian, Zhang, Zhiwen, Lianyuan Yu, Shi, Xiaohan et al. · 2022 · Figshare
- Additional file 1 of NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA moleculeFu, Hailu, Zheng, Haizi, Chen, Xiaoting, Matthew T. Weirauch, Muglia, Louis J., Li Wang, Yaping Liu · 2024 · Figshare
- Additional file 2 of Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart diseaseMing Li, Chen Lyu, Manyan Huang, Catherine Do, Benjamin Tycko, Philip J. Lupo, Stewart L Macleod, Christopher E. Randolph, Nianjun Liu, John S. Witte et al. · 2021 · Figshare
- Additional file 6 of Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart diseaseMing Li, Chen Lyu, Manyan Huang, Catherine Do, Benjamin Tycko, Philip J. Lupo, Stewart L Macleod, Christopher E. Randolph, Nianjun Liu, John S. Witte et al. · 2021 · Figshare
- Additional file 1 of Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart diseaseMing Li, Chen Lyu, Manyan Huang, Catherine Do, Benjamin Tycko, Philip J. Lupo, Stewart L Macleod, Christopher E. Randolph, Nianjun Liu, John S. Witte et al. · 2021 · Figshare
- Additional file 4 of Mapping methylation quantitative trait loci in cardiac tissues nominates risk loci and biological pathways in congenital heart diseaseMing Li, Chen Lyu, Manyan Huang, Catherine Do, Benjamin Tycko, Philip J. Lupo, Stewart L Macleod, Christopher E. Randolph, Nianjun Liu, John S. Witte et al. · 2021 · Figshare
- Additional file 1 of Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNAWu, Huanwen, Guo, Shiwei, Liu, Xiaoding, Yatong Li, Su, Zhixi, He, Qiye, Liu, Xiaoqian, Zhang, Zhiwen, Lianyuan Yu, Shi, Xiaohan et al. · 2022 · Figshare
- Additional file 2 of NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA moleculeFu, Hailu, Zheng, Haizi, Chen, Xiaoting, Matthew T. Weirauch, Muglia, Louis J., Li Wang, Yaping Liu · 2024 · Figshare
- NanoLoop: A Deep Learning Framework Leveraging Nanopore Sequencing for Chromatin Loop PredictionWenjie Huang, Li Tang, Matthew C. Hill, Yonghao Zhang, Jun Xie, Min Li · 2026 · Advanced Science
- MPCI: A novel metric for quantifying DNA methylation patterns in NGS dataNaghme Nazer, Hoda Mohammadzade, Mahya Mehrmohamadi · 2026 · PLoS Computational Biology
- Contrôle génétique et physiologique de la prolificité en race ovine lacaune : caractérisation de la mutation causale et role fonctionnel du gene FECLCamille Mansanet · 2013
- Épidémiologie épi-génétique de biomarqueurs du risque cardiovasculaire : intérêt de l’étude de la méthylation de l’ADN à partir d’échantillons sanguinsDylan Aïssi · 2015 · theses.fr (ABES)
- Genetic and Epigenetic Determinants of Thrombin Generation Potential : an epidemiological approachMaria-Ares Rocanin-Arjo · 2014
- Analyse de la méthylation de l'ADN par séquençage haut-débit chez la PouleMarjorie Mersch · 2018 · theses.fr (ABES)
- nanoASM: Long-Read Allele-Specific DNA Methylation Profiling Enables Functional Annotation of Regulatory Noncoding Variants in Human Prostate TissuesYijun Tian, Jodie Wong, Shannon K. McDonnell, Hua Zhong, Lang Wu, Nicholas Bradley Larson, Brandon J. Manley, Liang Wang · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
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