CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo
Mann, Ishminder K., Chatterjee, Raghunath, Zhao, Jianfei, He, Ximiao, Weirauch, Matthew T., Hughes, Timothy R., Vinson, Charles·2013·Genome Research
Cited by (127)
Items 101–127 of 127
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- Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytesXimiao He, Raghunath Chatterjee, Desiree Tillo, Andrew D. Smith, Peter C FitzGerald, Charles Vinson · 2014 · Epigenetics & Chromatin
- Relationship between the development of internal organs in young sheep and biochemical parameters of blood serumАлександра Владимировна Паштецкая, A.P. MARYNICH, Pavel Ostapchuk, Sergey A Emelyanov · 2020 · Agrarian Bulletin of the
- Zbtb24 binding protects promoter activity by antagonizing DNA methylation in mESCsHaoyu Wu, David San León, Maja Vukić, Kelly K. D. Vonk, Cor Breukel, Jihed Chouaref, Jeroen F. J. Laros, Lucia Daxinger · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription FactorsMartin Cusack, Hamish W. King, Paolo Spingardi, Benedikt Mathias Kessler, Robert J. Klose, Skirmantas Kriaučionis · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- An age classification model based on DNA methylation biomarkers of aging in human peripheral blood using random forest and artificial neural networkYe Li, Yukun Yang, Jie He, Jinxiu Hu, Xiangqing Zhu, Chuan Tian, Mengdie Chen, Xiaojuan Zhao, Ye Li, Hang Pan et al. · 2024 · Cellular and Molecular Biology
- Quantifying transcription factor specificity with advanced DNA universal microarrays featuring long and modified binding sitesYuval Bayer, Michael O’Hagan, Irina Miodownik, Ariel Afek · 2025 · Nucleic Acids Research
- The Chromatin Interaction SystemSarah Kreuz, Stefan-Sebastian David, Lorena V. Cortés-Medina, Wolfgang Fischle · 2022 · Wiley eBooks
- mIDEA: An Interpretable Structure–Sequence Model for Methylation-Dependent Protein–DNA Binding SensitivityYafan Zhang, Rina Li, J Zhong, Xingcheng Lin · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- The Relevance of Methylation Profiles of Equine ITGAL GeneTomasz Ząbek, Ewelina Semik‐Gurgul, Agnieszka Fornal, Artur Gurgul, Monika Bugno‐Poniewierska · 2015 · Annals of Animal Science
- Functional analysis of long non-coding RNAs in cancerLinda Vidarsdóttir · 2017 · Figshare
- Estudo translacional do receptor N-metil-d-aspartato em primeiro episódio psicótico e em modelos animais de psicoseCamila Marcelino Loureiro · 2021 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- Treinamento físico combinado e pressão arterial em mulheres de 50 a 70 anos: associação com screening global de variantes epigenéticasJoão Gabriel Ribeiro de Lima · 2022 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
- Epigenetic Reprogramming and Inheritance of the Cellular Differentiation Status Following Transient Expression of a Nonfunctional Dominant-Negative Retinoblastoma Mutant in Murine Mesenchymal Stem CellsMikhail Baryshev, Irina Maksimova, Ilona Sasoveca · 2024 · International Journal of Molecular Sciences
- TFProtBert: Detection of Transcription Factors Binding to Methylated DNA Using ProtBert Latent Space RepresentationSaima Gaffar, Kil To Chong, Hilal Tayara · 2025 · International Journal of Molecular Sciences
- A statistical model for quantitative analysis of single-molecule footprinting dataEvgeniy A. Ozonov, Laura Gaspa-Toneu, Antoine H.F.M. Peters · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Additional file 8 of Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor bindingHernandez-Corchado, Aldo, Hamed Shateri Najafabadi · 2022 · Figshare
- Additional file 1 of Kidney-specific methylation patterns correlate with kidney function and are lost upon kidney disease progressionNaor Sagy, Noa Meyrom, Pazit Beckerman, Oren Pleniceanu, Daniel Zvi Bar · 2024 · Figshare
- Additional file 1 of SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictionsSierra S. Nishizaki, Alan P. Boyle · 2022 · Figshare
- Additional file 2 of Kidney-specific methylation patterns correlate with kidney function and are lost upon kidney disease progressionNaor Sagy, Noa Meyrom, Pazit Beckerman, Oren Pleniceanu, Daniel Zvi Bar · 2024 · Figshare
- Additional file 1 of Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor bindingHernandez-Corchado, Aldo, Hamed Shateri Najafabadi · 2022 · Figshare
- Additional file 3 of Kidney-specific methylation patterns correlate with kidney function and are lost upon kidney disease progressionNaor Sagy, Noa Meyrom, Pazit Beckerman, Oren Pleniceanu, Daniel Zvi Bar · 2024 · Figshare
- TDG orchestrates ATF4-dependent gene transcription during retinoic acid-induced cell fate acquisitionMarion Turpin, Thierry Madigou, Maud Bizot, Rachael Acker, Stéphane Avner, Gérard Benoît, Martin Braud, Cynthia Fourgeux, Gaëlle Palierne, Jérémie Poschmann et al. · 2026 · Nucleic Acids Research
- MeDReaders 2.0: an updated database for modified DNA readersHongfei Li, Murong Zhou, Ximei Luo, Guohua Wang · 2026 · BMC Genomics
- BPabZIP, a new bZIP protein motif that promotes binding near, and displacement of, nucleosomesDesiree Tillo, Victor B. Zhurkin, Aleksey Porollo, Stewart R. Durell, Hayley K. Hesse, Matthew R. Hass, Phillip J. Dexheimer, Leah Claire Kottyan, Matthew T. Weirauch, Charles Vinson · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- The Drosophila CEBPG homolog Irbp18 partners with crc (ATF4) to mediate the integrated stress response in degenerative disease modelsSahana Mitra, Huai-Wei Huang, Rhihab Faruk, Arissa Low, Adam I Yeo, Hyung Don Ryoo · 2026 · Cell Reports
- DNA Methylation Readers in Biosensing StrategiesSamer Aphrham, Mark L. Verheijden, Jurriaan Huskens · 2026 · ACS Sensors