Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

Cited by (162)

Items 101–162 of 162

  1. Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison
    Xu Ling, Xin He, Dong Xin, Jiawei Han · 2008 · Journal of Computational Biology
  2. Unusual linkage patterns of ligands and their cognate receptors indicate a novel reason for non-random gene order in the human genome
    Laurence D. Hurst, Martin J. Lercher · 2005 · BMC Evolutionary Biology
  3. Genetic structure and evolution of the Vps25 family, a yeast ESCRT-II component.
    Ruth Slater, Naomi E. Bishop · 2006 · BMC Evolutionary Biology
  4. Reconstruction of the ancestral ferungulate karyotype by electronic chromosome painting (E-painting)
    Claus Kemkemer, Matthias Kohn, Hildegard Kehrer‐Sawatzki, Peter Minich, Josef Högel, Lutz Froenicke, Horst Hameister · 2006 · Chromosome Research
  5. Chicken functional genomics: an overview
    Robert J. Moore, Timothy J. Doran, T. G. Wise, Sarah J. Riddell, Kathy Granger, Tamsyn M. Crowley, K.A. Jenkins, Adam J. Karpala, Andrew G. D. Bean, John W. Lowenthal · 2005 · Australian Journal of Experimental Agriculture
  6. Gene Maps Linearization Using Genomic Rearrangement Distances
    Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk · 2007 · Journal of Computational Biology
  7. Establishment of high-resolution FISH mapping system and its application for molecular cytogenetic characterization of chromosomes in newt, Cynops pyrrhogaster (Urodela, Amphibia)
    Takahiro Murakami, Nobuyasu Maki, Chizuko Nishida‐Umehara, Yoichi Matsuda, Kiyokazu Agata · 2007 · Chromosome Research
  8. Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes
    Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner · 2009 · Lecture notes in computer science
  9. Recovering True Rearrangement Events on Phylogenetic Trees
    Hao Zhao, Guillaume Bourque · 2007 · Lecture notes in computer science
  10. Structural Relationships between Highly Conserved Elements and Genes in Vertebrate Genomes
    Hong Sun, Geir Skogerbø, Zhen Wang, Wei Liu, Yixue Li · 2008 · PLoS ONE
  11. Regional regulation of transcription in the chicken genome
    Haisheng Nie, Richard P. M. A. Crooijmans, J.W.M. Bastiaansen, Hendrik‐Jan Megens, Martien A. M. Groenen · 2010 · BMC Genomics
  12. Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures
    Géraldine Jean, David James Sherman, Macha Nikolski · 2009 · Journal of Computational Biology
  13. Perfect Sorting by Reversals Is Not Always Difficult
    Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul · 2005 · Lecture notes in computer science
  14. Robustness of birth-death and gain models for inferring evolutionary events
    Maureen Stolzer, Larry Wasserman, Dannie Durand · 2014 · BMC Genomics
  15. Correlation of microsynteny conservation and disease gene distribution in mammalian genomes
    Simon C. Lovell, Xiting Li, Nimmi R. Weerasinghe, Kathryn E. Hentges · 2009 · BMC Genomics
  16. Molecular cloning and characterization of chicken neuronal intermediate filament protein α‐internexin
    C C Liu, C. L. Chien · 2012 · The Journal of Comparative Neurology
  17. A small trip in the untranquil world of genomes
    Claire Lemaitre, Marie‐France Sagot · 2008 · Theoretical Computer Science
  18. Assessing the Quality of Whole Genome Alignments in Bacteria
    Firas Swidan, Ron Shamir A · 2009 · Advances in Bioinformatics
  19. Reconstruction de génomes ancestraux chez les vertébrés
    Matthieu Muffato · 2010 · theses.fr (ABES)
  20. A high resolution map of mammalian X chromosome fragile regions assessed by large-scale comparative genomics
    Carlos Fernando Prada Quiroga, Paul Laissue · 2014 · Mammalian Genome
  21. Avian Genomics in Animal Breeding and the End of the Model Organism
    Alain Vignal A, Lél Eöry · 2019 · Springer eBooks
  22. Computational Tools for the Analysis of Rearrangements in Mammalian Genomes
    Glenn Tesler, Guillaume Bourque · 2008 · Methods in molecular biology
  23. Evolutionary Loss of Genomic Proximity to Conserved Noncoding Elements Impacted the Gene Expression Dynamics During Mammalian Brain Development
    Meenakshi Bagadia, Keerthivasan Raanin Chandradoss, Yachna Jain, Harpreet Singh, Mohan Lal, Kuljeet Singh Sandhu · 2019 · Genetics
  24. SyDiG: uncovering Synteny in Distant Genomes
    Géraldine Jean, Macha Nikolski · 2011 · International Journal of Bioinformatics Research and Applications
  25. Comparative cytogenetics of North Island tree wētā in sympatry
    NE Mckean, Steven A. Trewick, Mary Morgan‐Richards · 2015 · New Zealand Journal of Zoology
  26. Highly variable rates of genome rearrangements between Hemiascomycetous yeast lineages
    Gilles Fischer, Eduardo P. C. Rocha, Frédéric Brunet, Massimo Vergassola, Bernard Dujon · 2005 · PLoS Genetics
  27. Genomic regions with distinct genomic distance conservation in vertebrate genomes
    Hong Sun, Geir Skogerbø, Xiao‐Hui Zheng, Wei Liu, Yixue Li · 2009 · BMC Genomics
  28. Models and Methods in Comparative Genomics
    Guillaume Bourque, Louxin Zhang · 2006 · Advances in computers
  29. On the Repeat-Annotated Phylogenetic Tree Reconstruction Problem
    Firas Swidan, Michal Ziv-Ukelson, Ron Y. Pinter · 2006 · Journal of Computational Biology
  30. MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes
    Srikrishna Putta, Jeramiah J. Smith, Chuck Stäben, S. Randal Voss · 2007 · Evolutionary Bioinformatics
  31. Exposing Phylogenetic Relationships by Genome Rearrangement
    Ying Chih Lin, Chuan Yi Tang · 2006 · Advances in computers
  32. Reconstructing the Phylogeny of the Human Chromosome 4 Synteny using Comparative Karyology and Genomic Data Analysis
    Barbara Picone, Luca Sineo · 2010 · Caryologia
  33. The Landscape of Micro-Inversions Provide Clues for Population Genetic Analysis of Humans
    Qu Li, Luotong Wang, Feifei He, Yilun Han, Longshu Yang, May Dongmei Wang, Huaiqiu Zhu · 2020 · Interdisciplinary Sciences Computational Life Sciences
  34. Stability of Rearrangement Measures in the Comparison of Genome Sequences
    David Sankoff, Matthew Mazowita · 2005 · Lecture notes in computer science
  35. Variants of the Consecutive-Ones Property motivated by the reconstruction of ancestral species
    Murray Patterson · 2012 · cIRcle (University of British Columbia)
  36. Development and Application of Genomic Resources for Bighorn Sheep (Ovis canadensis)
    Joshua M. Miller · 2015 · ERA: Education and Research Archive (University of Alberta)
  37. Computational Tools for the Analysis of Rearrangements in Mammalian Genomes
    Guillaume Bourque, Glenn Tesler · 2008 · Methods in molecular biology
  38. Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications
    Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler · 2010 · Communications in Information and Systems
  39. Reconstruction of Ancestral Genomes
    Roscoe Stanyon, Francesca Bigoni · 2013 · Wiley eBooks
  40. Chromosomal Rearrangements in Evolution
    Hao Zhao, Guillaume Bourque · 2010
  41. Reconstructing Ancient DNA Sequences in Silico
    Jian Ma · 2008 · Encyclopedia of Life Sciences
  42. Description of a Synteny on the Chicken Chromosome Zp23-22
    C.Y. Wang, Frederick Chi-Ching Leung · 2007 · Poultry Science
  43. Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters
    Étienne Danchin, Eric A. Gaucher, Pierre Pontarotti · 2007
  44. Genome Organization
    Gustavo Glusman, Arian F. A. Smit · 2009 · Encyclopedia of Complexity and Systems Science
  45. Analyzing Genome Rearrangements
    Guillaume Bourque · 2007
  46. A genetic and functional analysis of novel chicken interleukin-1 gene family members
    Mark S. Gibson · 2012 · UCL Discovery (University College London)
  47. Conserved orthology in mitochondrial genomes of distantly related nematodes
    P. L. Nima, A. Riju, N. Reena, Santhosh Joseph Eapen · 2010 · International Symposium on Biocomputing (ISB)
  48. Characteristics of Human and Mouse Orthologous Protein-Coding Nucleotide Sequences with Large G+C Content Variations
    Hiroshi Nakashima · 2007 · Current Genomics
  49. Comparative study on synteny between yeasts and vertebrates Etude comparative de la syntenie chez les levures et chez les vertebres
    Gilles Fischer · 2011
  50. Did position-effect guide the evolutionary dynamics of developmental gene expression?
    Meenakshi Bagadia, Keerthivasan Raanin Chandradoss, Yachna Jain, Harpreet Singh, Mohan Lal, Kuljeet Singh Sandhu · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  51. Mitochondrial Genomes as Tools for Analysis and Teaching of Comparative Genomics, Evolution, and Ecology
    Cloe S. Pogoda · 2018 · CU Scholar (University of Colorado Boulder)
  52. Fish and chips: the origin of human gene families is a predictor of the location of GWAS signals
    Sara Victoria Good, Ryan Daniel Gotesman, Ilya Kisselev, Andrew D. Paterson · 2021 · Research Square
  53. Current awareness on comparative and functional genomics
    2005 · Comparative and Functional Genomics
  54. Chromosome phylogeny
    Guillaume Bourque · 2005 · Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
  55. Enumeração de traces e identificação de breakpoints
    Christian Baudet · 2010
  56. Re-examination of the juxta-oral organ in domestic chicken (Gallus gallus domesticus) using immunohistochemistry and micro-computer tomography techniques
    Anna Kanewska, Wataru Yano, Yuto Fujimitsu, Masataka Ito · 2025 · Annals of Anatomy - Anatomischer Anzeiger
  57. Etude des mécanismes évolutifs perturbant l’organisation des gènes dans les génomes de vertébrés
    Camille Berthelot · 2012 · theses.fr (ABES)
  58. Algorithms for the comparisons of genomic sequences applied to bacterial genomes
    Raluca Uricaru · 2010 · theses.fr (ABES)
  59. The evolution of recombination and genomic structures : a modelling approach
    Alexandra Popa · 2011
  60. Étude de l'évolution de l'ordre des gènes de vertébrés par simulation
    Joseph MEX Lucas · 2016 · theses.fr (ABES)
  61. Unlocking cis -regulatory landscapes across 500 million years of evolution and disease mechanisms
    Tássia Mangetti Gonçalves, Casey L. Stewart, Samantha D Baxley, Jason Xu, Kevin Boyer, Bijesh George, Daofeng Li, Chengran Yang, Harrison W. Gabel, Xianhua Piao et al. · 2026 · NAR Genomics and Bioinformatics
  62. Comparative Genome Analysis
    Robert Michael Waterhouse, Evgenia V. Kriventseva, Evgeny M. Zdobnov · 2009 · WORLD SCIENTIFIC eBooks