Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
Siepel, Adam, Bejerano, Gill, Pedersen, Jakob S., Hinrichs, Angie S., Hou, Minmei, Rosenbloom, Kate, Clawson, Hiram, Spieth, John, Hillier, LaDeana W., Richards, Stephen, Weinstock, George M., Wilson, Richard K., Gibbs, Richard A., Kent, W. James, Miller, Webb, Haussler, David·2005·Genome Research
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- Additional file 10 of Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityStephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle et al. · 2020 · Figshare
- Additional file 11 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancersLuzhang Ji, Yuanyuan Shi, Qian Bian · 2023 · Figshare
- Additional file 8 of Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityStephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle et al. · 2020 · Figshare
- Additional file 1 of Genetic effects of sequence-conserved enhancer-like elements on human complex traitsXiang Zhu, Shining Ma, Wing Hung Wong · 2024 · Figshare
- Additional file 7 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virusXuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao et al. · 2020 · Figshare
- Additional file 4 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virusXuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao et al. · 2020 · Figshare
- Additional file 9 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancersLuzhang Ji, Yuanyuan Shi, Qian Bian · 2023 · Figshare
- Additional file 10 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regenerationYu‐Chan Zhang, Yan-Fei Zhou, Yu Cheng, Jia-Hui Huang, Jian‐Ping Lian, Lu Yang, Rui-Rui He, Meng-Qi Lei, Yuwei Liu, Chao Yuan et al. · 2022 · Figshare
- Additional file 12 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancersLuzhang Ji, Yuanyuan Shi, Qian Bian · 2023 · Figshare
- Additional file 7 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regenerationYu‐Chan Zhang, Yan-Fei Zhou, Yu Cheng, Jia-Hui Huang, Jian‐Ping Lian, Lu Yang, Rui-Rui He, Meng-Qi Lei, Yuwei Liu, Chao Yuan et al. · 2022 · Figshare
- Additional file 3 of Universal chromatin state annotation of the mouse genomeHa Vu, Jason Ernst · 2023 · Figshare
- Additional file 6 of Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityStephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle et al. · 2020 · Figshare
- Additional file 8 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virusXuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao et al. · 2020 · Figshare
- Additional file 5 of Universal chromatin state annotation of the mouse genomeHa Vu, Jason Ernst · 2023 · Figshare
- Additional file 7 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancersLuzhang Ji, Yuanyuan Shi, Qian Bian · 2023 · Figshare
- Additional file 9 of Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityStephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle et al. · 2020 · Figshare
- Additional file 6 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regenerationYu‐Chan Zhang, Yan-Fei Zhou, Yu Cheng, Jia-Hui Huang, Jian‐Ping Lian, Lu Yang, Rui-Rui He, Meng-Qi Lei, Yuwei Liu, Chao Yuan et al. · 2022 · Figshare
- Additional file 5 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regenerationYu‐Chan Zhang, Yan-Fei Zhou, Yu Cheng, Jia-Hui Huang, Jian‐Ping Lian, Lu Yang, Rui-Rui He, Meng-Qi Lei, Yuwei Liu, Chao Yuan et al. · 2022 · Figshare
- Additional file 2 of dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVsXiaoming Liu, Chang Li, Chengcheng Mou, Yibo Dong, Yi-Cheng Tu · 2020 · Figshare
- Additional file 2 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regenerationYu‐Chan Zhang, Yan-Fei Zhou, Yu Cheng, Jia-Hui Huang, Jian‐Ping Lian, Lu Yang, Rui-Rui He, Meng-Qi Lei, Yuwei Liu, Chao Yuan et al. · 2022 · Figshare
- Additional file 13 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancersLuzhang Ji, Yuanyuan Shi, Qian Bian · 2023 · Figshare
- Additional file 11 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virusXuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao et al. · 2020 · Figshare
- Additional file 5 of Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityStephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle et al. · 2020 · Figshare
- Additional file 2 of Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafishH. Josh Jang, Yujie Chen, Ge, Jiaxin, Alicia N. Wilkening, Yiran Hou, Hyung Joo Lee, You Rim Choi, Rebecca F. Lowdon, Xiaoyun Xing, Daofeng Li et al. · 2021 · Figshare
- Additional file 5 of Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant speciesYan Zhu, Longxian Chen, Xiangna Hong, Hanping Shi, Xuan Li · 2022 · Figshare
- Additional file 8 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regenerationYu‐Chan Zhang, Yan-Fei Zhou, Yu Cheng, Jia-Hui Huang, Jian‐Ping Lian, Lu Yang, Rui-Rui He, Meng-Qi Lei, Yuwei Liu, Chao Yuan et al. · 2022 · Figshare
- Additional file 5 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virusXuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao et al. · 2020 · Figshare
- Additional file 3 of Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant speciesYan Zhu, Longxian Chen, Xiangna Hong, Hanping Shi, Xuan Li · 2022 · Figshare
- Additional file 7 of Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneityStephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle et al. · 2020 · Figshare
- Additional file 13 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virusXuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao et al. · 2020 · Figshare
- Additional file 4 of An unsupervised deep learning framework for predicting human essential genes from population and functional genomic dataTroy M. LaPolice, Yi-Fei Huang · 2023 · Figshare
- Additional file 14 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancersLuzhang Ji, Yuanyuan Shi, Qian Bian · 2023 · Figshare
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