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Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
Abstract
A new method of quantifying correlations in symbolic sequences is applied to DNA nucleotides. Spectral density measurements of individual base positions demonstrate the ubiquity of low-frequency 1/${\mathit{f}}^{\mathrm{\ensuremath{\beta}}}$ noise and long-range fractal correlations as well as prominent short-range periodicities. Ensemble averages over classifications in the GenBank databank (primate, invertebrate, plant, etc.) show systematic changes in spectral exponent \ensuremath{\beta} with evolutionary category.
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Citations
Cited by
Gilden, D. L., Thornton, T., & Mallon, M. W. (1995) · Science · doi:10.1126/science.7892611 · Cited by 641
Correlated and Uncorrelated Regions in Heart-Rate Fluctuations during Sleep
Bunde, A., Havlin, S., Kantelhardt, J. W., Penzel, T., Peter, J.-H., & Voigt, K. (2000) · Physical Review Letters · doi:10.1103/physrevlett.85.3736 · Cited by 543
The role of aperiodic order in science and technology
Maciá, E. (2006) · Reports on Progress in Physics · doi:10.1088/0034-4885/69/2/r03 · Cited by 332
Finite-size effects on long-range correlations: Implications for analyzing DNA sequences
Peng, C.-K., Buldyrev, S. V., Goldberger, A. L., Havlin, S., Simons, M., & Stanley, H. E. (1993) · Physical Review E · doi:10.1103/physreve.47.3730 · Cited by 277
Anomalous localization in low-dimensional systems with correlated disorder
Izrailev, F. M., Krokhin, A. A., & Makarov, N. M. (2012) · Physics Reports · doi:10.1016/j.physrep.2011.11.002 · Cited by 274
Metadata
- Authors
- Voss, R. F.
- Venue
- Physical Review Letters
- Publisher
- American Physical Society (APS)
- Published
- 1992-06-22
- Volume
- 68
- Issue
- 25
- Pages
- 3805-3808
- ISSN
- 0031-9007 (ISSN-L)
- OpenAlex
- W2011480164
- Cited by
- 898
- References
- 0
- FWCI
- 8.53
- Type
- journal article
- Language
- en
- Open access
- closed
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- Voss, R. F. (1992). Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Physical Review Letters. https://doi.org/10.1103/physrevlett.68.3805
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