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Optimal Target Search on a Fast-Folding Polymer Chain with Volume Exchange
Open accessAbstract
We study the search process of a target on a rapidly folding polymer ("DNA") by an ensemble of particles ("proteins"), whose search combines 1D diffusion along the chain, Lévy type diffusion mediated by chain looping, and volume exchange. A rich behavior of the search process is obtained with respect to the physical parameters, in particular, for the optimal search.
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Cited by
How a protein searches for its site on DNA: the mechanism of facilitated diffusion
Mirny, L., Slutsky, M., Wunderlich, Z., Tafvizi, A., Leith, J., & Kosmrlj, A. (2009) · Journal of Physics A: Mathematical and Theoretical · doi:10.1088/1751-8113/42/43/434013 · Cited by 391
A toolbox for determining subdiffusive mechanisms
Meroz, Y., & Sokolov, I. M. (2015) · Physics Reports · doi:10.1016/j.physrep.2015.01.002 · Cited by 297
Superdiffusive heat conduction in semiconductor alloys. I. Theoretical foundations
Vermeersch, B., Carrete, J., Mingo, N., & Shakouri, A. (2015) · Physical Review B · doi:10.1103/physrevb.91.085202 · Cited by 96
Vermeersch, B., Mohammed, A. M. S., Pernot, G., Koh, Y. R., & Shakouri, A. (2015) · Physical Review B · doi:10.1103/physrevb.91.085203 · Cited by 78
Complex quantum networks: From universal breakdown to optimal transport
Mülken, O., Dolgushev, M., & Galiceanu, M. (2016) · Physical Review E · doi:10.1103/physreve.93.022304 · Cited by 26
Metadata
- Authors
- Lomholt, M. A., Ambjörnsson, T., & Metzler, R.
- Venue
- Physical Review Letters
- Publisher
- American Physical Society (APS)
- Published
- 2005-12-22
- Volume
- 95
- Issue
- 26
- Pages
- 260603-260603
- ISSN
- 0031-9007 (ISSN-L)
- 1079-7114
- OpenAlex
- W2088200354
- Cited by
- 231
- References
- 0
- FWCI
- 3.57
- Type
- journal article
- Language
- en
- Open access
- green
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- Lomholt, M. A., Ambjörnsson, T., & Metzler, R. (2005). Optimal Target Search on a Fast-Folding Polymer Chain with Volume Exchange. Physical Review Letters. https://doi.org/10.1103/physrevlett.95.260603
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