The DOI matches its Crossref record; 52 of the 52 references it cites were found in a registry or an index.
Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis
Open accessAbstract
The three tandemly arranged CBF genes, CBF1, CBF2, and CBF3, are involved in cold acclimation. Due to the lack of stable loss-of-function Arabidopsis (Arabidopsis thaliana) mutants deficient in all three CBF genes, it is still unclear whether the CBF genes are essential for freezing tolerance and whether they may have other functions besides cold acclimation. In this study, we used the CRISPR/Cas9 system to generate cbf single, double, and triple mutants. Compared to the wild type, the cbf triple mutants are extremely sensitive to freezing after cold acclimation, demonstrating that the three CBF genes are essential for cold acclimation. Our results show that the three CBF genes also contribute to basal freezing tolerance. Unexpectedly, we found that the cbf triple mutants are defective in seedling development and salt stress tolerance. Transcript profiling revealed that the CBF genes regulate 414 cold-responsive (COR) genes, of which 346 are CBF-activated genes and 68 are CBF-repressed genes. The analysis suggested that CBF proteins are extensively involved in the regulation of carbohydrate and lipid metabolism, cell wall modification, and gene transcription. Interestingly, like the triple mutants, cbf2 cbf3 double mutants are more sensitive to freezing after cold acclimation compared to the wild type, but cbf1 cbf3 double mutants are more resistant, suggesting that CBF2 is more important than CBF1 and CBF3 in cold acclimation-dependent freezing tolerance. Our results not only demonstrate that the three CBF genes together are required for cold acclimation and freezing tolerance, but also reveal that they are important for salt tolerance and seedling development.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., Pimentel, H., Salzberg, S. L., Rinn, J. L., & Pachter, L. (2012) · Nature Protocols · doi:10.1038/nprot.2012.016 · Cited by 12,116
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
Gaj, T., Gersbach, C. A., & Barbas, C. F. (2013) · Trends in Biotechnology · doi:10.1016/j.tibtech.2013.04.004 · Cited by 3,820
PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms
Thomashow, M. F. (1999) · Annual Review of Plant Physiology and Plant Molecular Biology · doi:10.1146/annurev.arplant.50.1.571 · Cited by 3,551
Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., & Shinozaki, K. (1998) · The Plant Cell · doi:10.1105/tpc.10.8.1391 · Cited by 3,044
agriGO: a GO analysis toolkit for the agricultural community
Du, Z., Zhou, X., Ling, Y., Zhang, Z., & Su, Z. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq310 · Cited by 2,396
Self-citationCold stress regulation of gene expression in plants
Chinnusamy, V., Zhu, J., & Zhu, J.-K. (2007) · Trends in Plant Science · doi:10.1016/j.tplants.2007.07.002 · Cited by 2,002
Self-citationSakuma, Y., Liu, Q., Dubouzet, J. G., Abe, H., Shinozaki, K., & Yamaguchi-Shinozaki, K. (2002) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2001.6299 · Cited by 1,993
Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., et al. (2002) · The Plant Journal · doi:10.1046/j.1365-313x.2002.01359.x · Cited by 1,924
Stockinger, E. J., Gilmour, S. J., & Thomashow, M. F. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.3.1035 · Cited by 1,807
Arabidopsis CBF1 Overexpression Induces COR Genes and Enhances Freezing Tolerance
Jaglo-Ottosen, K. R., Gilmour, S. J., Zarka, D. G., Schabenberger, O., & Thomashow, M. F. (1998) · Science · doi:10.1126/science.280.5360.104 · Cited by 1,702
Cited by
Elucidating the molecular mechanisms mediating plant salt‐stress responses
Yang, Y., & Guo, Y. (2018) · New Phytologist · doi:10.1111/nph.14920 · Cited by 1,631
Molecular Regulation of Plant Responses to Environmental Temperatures
Ding, Y., Shi, Y., & Yang, S. (2020) · Molecular Plant · doi:10.1016/j.molp.2020.02.004 · Cited by 787
Li, H., Ding, Y., Shi, Y., Zhang, X., Zhang, S., Gong, Z., & Yang, S. (2017) · Developmental Cell · doi:10.1016/j.devcel.2017.09.025 · Cited by 489
Li, H., Ye, K., Shi, Y., Cheng, J., Zhang, X., & Yang, S. (2017) · Molecular Plant · doi:10.1016/j.molp.2017.01.004 · Cited by 426
Regulatory networks in plant responses to drought and cold stress
Kim, J.-S., Kidokoro, S., Yamaguchi-Shinozaki, K., & Shinozaki, K. (2024) · Plant Physiology · doi:10.1093/plphys/kiae105 · Cited by 303
Metadata
- Authors
- Zhao, C., Zhang, Z., Xie, S., Si, T., Li, Y., & Zhu, J.-K.
- Venue
- Plant Physiology
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-06-01
- Volume
- 171
- Issue
- 4
- Pages
- 2744-2759
- ISSN
- 0032-0889 (ISSN-L)
- 1532-2548
- OpenAlex
- W2416323981
- Cited by
- 615
- References
- 52
- FWCI
- 39.55
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis. https://app.cochat.ai/papers/10.1104/pp.16.00533
- The paper
- Zhao, C., Zhang, Z., Xie, S., Si, T., Li, Y., & Zhu, J.-K. (2016). Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis. Plant Physiology. https://doi.org/10.1104/pp.16.00533
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.