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Expression Profile Analysis of the Low-Oxygen Response in Arabidopsis Root Cultures[W]
Open accessAbstract
We used DNA microarray technology to identify genes involved in the low-oxygen response of Arabidopsis root cultures. A microarray containing 3500 cDNA clones was screened with cDNA samples taken at various times (0.5, 2, 4, and 20 h) after transfer to low-oxygen conditions. A package of statistical tools identified 210 differentially expressed genes over the four time points. Principal component analysis showed the 0.5-h response to contain a substantially different set of genes from those regulated differentially at the other three time points. The differentially expressed genes included the known anaerobic proteins as well as transcription factors, signal transduction components, and genes that encode enzymes of pathways not known previously to be involved in low-oxygen metabolism. We found that the regulatory regions of genes with a similar expression profile contained similar sequence motifs, suggesting the coordinated transcriptional control of groups of genes by common sets of regulatory factors.
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Citations
Cited by
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How plants cope with complete submergence
Voesenek, L. A. C. J., Colmer, T. D., Pierik, R., Millenaar, F. F., & Peeters, A. J. M. (2006) · New Phytologist · doi:10.1111/j.1469-8137.2006.01692.x · Cited by 580
Response of plant metabolism to too little oxygen
Geigenberger, P. (2003) · Current Opinion in Plant Biology · doi:10.1016/s1369-5266(03)00038-4 · Cited by 572
Plant responses to hypoxia – is survival a balancing act?
Fukao, T., & Bailey-Serres, J. (2004) · Trends in Plant Science · doi:10.1016/j.tplants.2004.07.005 · Cited by 447
Specific functions of individual class III peroxidase genes
Cosio, C., & Dunand, C. (2009) · Journal of Experimental Botany · doi:10.1093/jxb/ern318 · Cited by 444
Metadata
- Authors
- Klok, E. J., Wilson, I. W., Wilson, D., Chapman, S. C., Ewing, R. M., Somerville, S. C., Peacock, W. J., Dolferus, R., & Dennis, E. S.
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-10-01
- Volume
- 14
- Issue
- 10
- Pages
- 2481-2494
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- OpenAlex
- W2124988087
- Cited by
- 416
- References
- 0
- FWCI
- 29.85
- Type
- journal article
- Language
- en
- Open access
- green
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- Klok, E. J., Wilson, I. W., Wilson, D., Chapman, S. C., Ewing, R. M., Somerville, S. C., Peacock, W. J., Dolferus, R., & Dennis, E. S. (2002). Expression Profile Analysis of the Low-Oxygen Response in Arabidopsis Root Cultures[W]. The Plant Cell. https://doi.org/10.1105/tpc.004747
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