The DOI matches its Crossref record; 55 of the 55 references it cites were found in a registry or an index.
Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum
Open accessAbstract
The replicative retrotransposon life cycle offers the potential for explosive increases in copy number and consequent inflation of genome size. The BARE-1 retrotransposon family of barley is conserved, disperse, and transcriptionally active. To assess the role of BARE-1 in genome evolution, we determined the copy number of its integrase, its reverse transcriptase, and its long terminal repeat (LTR) domains throughout the genus Hordeum. On average, BARE-1 contributes 13.7 x 10(3) full-length copies, amounting to 2.9% of the genome. The number increases with genome size. Two LTRs are associated with each internal domain in intact retrotransposons, but surprisingly, BARE-1 LTRs were considerably more prevalent than would be expected from the numbers of intact elements. The excess in LTRs increases as both genome size and BARE-1 genomic fraction decrease. Intrachromosomal homologous recombination between LTRs could explain the excess, removing BARE-1 elements and leaving behind solo LTRs, thereby reducing the complement of functional retrotransposons in the genome and providing at least a partial "return ticket from genomic obesity."
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Cites
Molecular Cloning: A Laboratory Manual
Sambrook, J., Fritsch, E., & Maniatis, T. (1989) · UCLA - Biblioteca de Ciencias de la Salud · Cited by 133,589
Selfish DNA: the ultimate parasite
Orgel, L. E., & Crick, F. H. C. (1980) · Nature · doi:10.1038/284604a0 · Cited by 2,156
Selfish genes, the phenotype paradigm and genome evolution
Doolittle, W. F., & Sapienza, C. (1980) · Nature · doi:10.1038/284601a0 · Cited by 1,829
Nested Retrotransposons in the Intergenic Regions of the Maize Genome
SanMiguel, P., Tikhonov, A., Jin, Y.-K., Motchoulskaia, N., Zakharov, D., Melake-Berhan, A., Springer, P. S., Edwards, K. J., Lee, M., Avramova, Z., et al. (1996) · Science · doi:10.1126/science.274.5288.765 · Cited by 1,401
Hybridization of nucleic acids immobilized on solid supports
Meinkoth, J., & Wahl, G. (1984) · Analytical Biochemistry · doi:10.1016/0003-2697(84)90808-x · Cited by 1,324
The paleontology of intergene retrotransposons of maize
SanMiguel, P., Gaut, B. S., Tikhonov, A., Nakajima, Y., & Bennetzen, J. L. (1998) · Nature Genetics · doi:10.1038/1695 · Cited by 998
Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana
The EU Arabidopsis Genome Project, Bevan, M., Bancroft, I., Bent, E., Love, K., Goodman, H., Dean, C., Bergkamp, R., Dirkse, W., Van Staveren, M., et al. (1998) · Nature · doi:10.1038/35140 · Cited by 825
Gaut, B. S., Morton, B. R., McCaig, B. C., & Clegg, M. T. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.19.10274 · Cited by 771
Origins and evolutionary relationships of retroviruses
Doolittle, R. F., Johnson, M. S., & McClure, M. A. (1989) · The Quarterly Review of Biology · doi:10.1086/416128 · Cited by 577
Activation of plant retrotransposons under stress conditions
Grandbastien, M. (1998) · Trends in Plant Science · doi:10.1016/s1360-1385(98)01232-1 · Cited by 575
Cited by
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Devos, K. M., Brown, J. K. M., & Bennetzen, J. L. (2002) · Genome Research · doi:10.1101/gr.132102 · Cited by 685
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Puchta, H. (2004) · Journal of Experimental Botany · doi:10.1093/jxb/eri025 · Cited by 601
Epigenetic regulation of transposable elements in plants
Lisch, D. (2009) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.59.032607.092744 · Cited by 469
Dynamics of genome size evolution in birds and mammals
Kapusta, A., Suh, A., & Feschotte, C. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1616702114 · Cited by 466
Huang, J., Zhang, K., Shen, Y., Huang, Z., Li, M., Tang, D., Gu, M., & Cheng, Z. (2009) · Genomics · doi:10.1016/j.ygeno.2008.11.007 · Cited by 42
Metadata
- Authors
- Vicient, C. M., Suoniemi, A., Anamthawat-Jónsson, K., Tanskanen, J., Beharav, A., Nevo, E., & Schulman, A. H.
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 1999-09
- Volume
- 11
- Issue
- 9
- Pages
- 1769-1784
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- OpenAlex
- W2122893781
- Cited by
- 355
- References
- 55
- FWCI
- 24.86
- Type
- journal article
- Language
- en
- Open access
- green
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- Vicient, C. M., Suoniemi, A., Anamthawat-Jónsson, K., Tanskanen, J., Beharav, A., Nevo, E., & Schulman, A. H. (1999). Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum. The Plant Cell. https://doi.org/10.1105/tpc.11.9.1769
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