The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Automated matching of high- and low-resolution structural models
Abstract
A method is presented for automated best-matching alignment of three-dimensional models represented by ensembles of points. A normalized spatial discrepancy (NSD) is introduced as a proximity measure between three-dimensional objects. Starting from an inertia-axes alignment, the algorithm minimizes the NSD; the final value of the NSD provides a quantitative estimate of similarity between the objects. The method is implemented in a computer program. Simulations have been performed to test its performance on model structures with specified numbers of points ranging from a few to a few thousand. The method can be used for comparative analysis of structural models obtained by different methods,e.g.of high-resolution crystallographic atomic structures and low-resolution models from solution scattering or electron microscopy.
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Cites
The Crystal Structure of Dimeric Kinesin and Implications for Microtubule-Dependent Motility
Kozielski, F., Sack, S., Marx, A., Thormählen, M., Schönbrunn, E., Biou, V, Thompson, A., Mandelkow, E.-M., & Mandelkow, E. (1997) · Cell · doi:10.1016/s0092-8674(00)80489-4 · Cited by 408
Cited by
Putnam, C. D., Hammel, M., Hura, G. L., & Tainer, J. A. (2007) · Quarterly Reviews of Biophysics · doi:10.1017/s0033583507004635 · Cited by 1,184
Kershaw, N. J., Murphy, J. M., Liau, N. P. D., Varghese, L. N., Laktyushin, A., Whitlock, E. L., Lucet, I. S., Nicola, N. A., & Babon, J. J. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2519 · Cited by 301
Vasohibins encode tubulin detyrosinating activity
Nieuwenhuis, J., Adamopoulos, A., Bleijerveld, O. B., Mazouzi, A., Stickel, E., Celie, P., Altelaar, M., Knipscheer, P., Perrakis, A., Blomen, V. A., et al. (2017) · Science · doi:10.1126/science.aao5676 · Cited by 266
Domain Motion in Cytochrome P450 Reductase
Ellis, J., Gutierrez, A., Barsukov, I. L., Huang, W.-C., Grossmann, J. G., & Roberts, G. C. K. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.054304 · Cited by 140
Structural and mechanistic insights into regulation of the retromer coat by TBC1d5
Jia, D., Zhang, J.-S., Li, F., Wang, J., Deng, Z., White, M. A., Osborne, D. G., Phillips-Krawczak, C., Gomez, T. S., Li, H., et al. (2016) · Nature Communications · doi:10.1038/ncomms13305 · Cited by 118
Metadata
- Authors
- Kozin, M. B., & Svergun, D. I.
- Venue
- Journal of Applied Crystallography
- Published
- 2001-02-01
- Volume
- 34
- Issue
- 1
- Pages
- 33-41
- ISSN
- 0021-8898 (ISSN-L)
- OpenAlex
- W2149885731
- Cited by
- 1,302
- References
- 1
- FWCI
- 11.86
- Type
- journal article
- Language
- en
- Open access
- closed
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- Kozin, M. B., & Svergun, D. I. (2001). Automated matching of high- and low-resolution structural models. Journal of Applied Crystallography. https://doi.org/10.1107/s0021889800014126
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
