The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.
ARP/wARP and molecular replacement
Open accessAbstract
The aim of ARP/wARP is improved automation of model building and refinement in macromolecular crystallography. Once a molecular-replacement solution has been obtained, it is often tedious to refine and rebuild the initial (search) model. ARP/wARP offers three options to automate that task to varying extents: (i) autobuilding of a completely new model based on phases calculated from the molecular-replacement solution, (ii) updating of the initial model by atom addition and deletion to obtain an improved map and (iii) docking of a structure onto a new (or mutated) sequence, followed by rebuilding and refining the side chains in real space. A few examples are presented where ARP/wARP made a considerable difference in the speed of structure solution and/or made possible refinement of otherwise difficult or uninterpretable maps. The resolution range allowing complete autobuilding of protein structures is currently 2.0 Å, but for map improvement considerable advances over more conventional refinement techniques are evident even at 3.2 Å spacing.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Jones, T. A., Zou, J. Y., Cowan, S. W., & Kjeldgaard, M. (1991) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767390010224 · Cited by 12,648
AMoRe: an automated package for molecular replacement
Navaza, J. (1994) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767393007597 · Cited by 4,953
International Tables for Crystallography: Physical properties of crystals
(2013) · International Tables for Crystallography · doi:10.1107/97809553602060000113 · Cited by 3,794
XtalView/Xfit—A Versatile Program for Manipulating Atomic Coordinates and Electron Density
McRee, D. E. (1999) · Journal of Structural Biology · doi:10.1006/jsbi.1999.4094 · Cited by 2,094
Crystallographic Computing 6: A Window on Modern Crystallography
(1993) · doi:10.1093/oso/9780198557883.001.0001 · Cited by 1,998
Improved Fourier coefficients for maps using phases from partial structures with errors
Read, R. J. (1986) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767386099622 · Cited by 1,873
Structure of an IκBα/NF-κB Complex
Jacobs, M. D., & Harrison, S. C. (1998) · Cell · doi:10.1016/s0092-8674(00)81698-0 · Cited by 821
Structure and assembly of the Alu domain of the mammalian signal recognition particle
Weichenrieder, O., Wild, K., Strub, K., & Cusack, S. (2000) · Nature · doi:10.1038/35041507 · Cited by 190
International Tables for Crystallography
(2021) · International Tables for Crystallography · doi:10.1107/97809553602060000117 · Cited by 93
Dauter, Z., Persson, R., Rosengren, A. M., Nyman, P. O., Wilson, K. S., & Cedergren‐Zeppezauer, E. S. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.2332 · Cited by 82
Self-citation
Cited by
Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma
Krauthammer, M., Kong, Y., Ha, B. H., Evans, P., Bacchiocchi, A., McCusker, J. P., Cheng, E., Davis, M. J., Goh, G., Choi, M., et al. (2012) · Nature Genetics · doi:10.1038/ng.2359 · Cited by 1,191
The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
Ipsaro, J. J., Haase, A. D., Knott, S. R., Joshua-Tor, L., & Hannon, G. J. (2012) · Nature · doi:10.1038/nature11502 · Cited by 334
Huang, L.-S., Cobessi, D., Tung, E. Y., & Berry, E. A. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.05.053 · Cited by 304
Bian, C., Xu, C., Ruan, J., Lee, K. K., Burke, T. L., Tempel, W., Barsyte, D., Li, J., Wu, M., Zhou, B. O., et al. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.193 · Cited by 281
Structural Biology of Human H3K9 Methyltransferases
Wu, H., Min, J., Lunin, V. V., Antoshenko, T., Dombrovski, L., Zeng, H., Allali-Hassani, A., Campagna-Slater, V., Vedadi, M., Arrowsmith, C. H., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0008570 · Cited by 268
Metadata
- Authors
- Perrakis, A., Harkiolaki, M., Wilson, K. S., & Lamzin, V. S.
- Venue
- Acta Crystallographica Section D Biological Crystallography
- Published
- 2001-09-21
- Volume
- 57
- Issue
- 10
- Pages
- 1445-1450
- ISSN
- 0907-4449 (ISSN-L)
- OpenAlex
- W2118455767
- Cited by
- 455
- References
- 11
- FWCI
- 10.51
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: ARP/wARP and molecular replacement. https://app.cochat.ai/papers/10.1107/s0907444901014007
- The paper
- Perrakis, A., Harkiolaki, M., Wilson, K. S., & Lamzin, V. S. (2001). ARP/wARP and molecular replacement. Acta Crystallographica Section D Biological Crystallography. https://doi.org/10.1107/s0907444901014007
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
