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Protein Data Bank (PDB): Database of Three-Dimensional Structural Information of Biological Macromolecules
Open accessAbstract
The Protein Data Bank (PDB) at Brookhaven National Laboratory, is a database containing experimentally determined three-dimensional structures of proteins, nucleic acids and other biological macromolecules, with approximately 8000 entries. Data are easily submitted via PDB's WWW-based tool AutoDep, in either mmCIF or PDB format, and are most conveniently examined via PDB's WWW-based tool 3DB Browser.
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Cited by
Recent advances and applications of deep learning methods in materials science
Choudhary, K., DeCost, B., Chen, C., Jain, A., Tavazza, F., Cohn, R., Park, C. W., Choudhary, A., Agrawal, A., Billinge, S. J. L., et al. (2022) · npj Computational Materials · doi:10.1038/s41524-022-00734-6 · Cited by 1,172
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive
Burley, S. K., Berman, H. M., Kleywegt, G. J., Markley, J. L., Nakamura, H., & Velankar, S. (2017) · Methods in Molecular Biology · doi:10.1007/978-1-4939-7000-1_26 · Cited by 1,141
Alignment of Biological Sequences with Jalview
Procter, J. B., Carstairs, G. M., Soares, B., Mourão, K., Ofoegbu, T. C., Barton, D., Lui, L., Menard, A., Sherstnev, N., Roldan-Martinez, D., et al. (2021) · Methods in Molecular Biology · doi:10.1007/978-1-0716-1036-7_13 · Cited by 221
Great Metalloclusters in Enzymology
Rees, D. C. (2002) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.71.110601.135406 · Cited by 220
Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15
Liu, J., Guo, Z., Wu, T., Roy, R. S., Quadir, F., Chen, C., & Cheng, J. (2023) · Communications Biology · doi:10.1038/s42003-023-05525-3 · Cited by 86
Metadata
- Authors
- Sussman, J. L., Lin, D., Jiang, J., Manning, N. O., Prilusky, J., Ritter, O., & Abola, E. E.
- Venue
- Acta Crystallographica Section D Biological Crystallography
- Published
- 1998-11-01
- Volume
- 54
- Issue
- 6
- Pages
- 1078-1084
- ISSN
- 0907-4449 (ISSN-L)
- OpenAlex
- W2106612397
- Cited by
- 740
- References
- 0
- FWCI
- 19.99
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- CoChat. (2026). Citation check: Protein Data Bank (PDB): Database of Three-Dimensional Structural Information of Biological Macromolecules. https://app.cochat.ai/papers/10.1107/s0907444998009378
- The paper
- Sussman, J. L., Lin, D., Jiang, J., Manning, N. O., Prilusky, J., Ritter, O., & Abola, E. E. (1998). Protein Data Bank (PDB): Database of Three-Dimensional Structural Information of Biological Macromolecules. Acta Crystallographica Section D Biological Crystallography. https://doi.org/10.1107/s0907444998009378
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
