Efficient Multiple Organ Localization in CT Image Using 3D Region Proposal Network
Abstract
Organ localization is an essential preprocessing step for many medical image analysis tasks such as image registration, organ segmentation and lesion detection. In this work, we propose an efficient method for multiple organ localization in CT image using 3D region proposal network. Compared with other convolutional neural network based methods that successively detect the target organs in all slices to assemble the final 3D bounding box, our method is fully implemented in 3D manner, thus can take full advantages of the spatial context information in CT image to perform efficient organ localization with only one prediction. We also propose a novel backbone network architecture that generates high-resolution feature maps to further improve the localization performance on small organs. We evaluate our method on two clinical datasets, where 11 body organs and 12 head organs (or anatomical structures) are included. As our results shown, the proposed method achieves higher detection precision and localization accuracy than the current state-of-theart methods with approximate 4 to 18 times faster processing speed. Additionally, we have established a public dataset dedicated for organ localization on http://dx. doi.org/10.21227/df8g-pq27. The full implementation of the proposed method have also been made publicly available on https://github.com/superxuang/caffe_3d_faster_rcnn.
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OrganMNIST3D is a 3D dataset based on the same source as Organ{A,C,S}MNIST, using 3D bounding boxes processed into 28 × 28 × 28 for multi-class classification of 11 body organs.
“The source of the OrganMNIST3D is the same as that of the Organ{A,C,S}MNIST. Instead of 2D images, we directly use the 3D bounding boxes and process the images into 28 × 28 × 28 to perform multi-class classification of 11 body organs.”
From MedMNIST v2 - A large-scale lightweight benchmark for 2D and 3D biomedical image classification (2023) · cites this paper as [31]
Cites
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MedMNIST v2 - A large-scale lightweight benchmark for 2D and 3D biomedical image classification
Yang, J., Shi, R., Wei, D., Liu, Z., Zhao, L., Ke, B., Pfister, H., & Ni, B. (2023) · Scientific Data · doi:10.1038/s41597-022-01721-8 · Cited by 1,043 · see citing works
“We use bounding-box annotations of 11 body organs from another study 30 to obtain the organ labels.”
Method
- Authors
- Xu, X., Zhou, F., Liu, B., Fu, D., & Bai, X.
- Affiliations
- Beihang University (CN)
- Venue
- IEEE Transactions on Medical Imaging
- Published
- 2019-08
- Volume
- 38
- Issue
- 8
- Pages
- 1885-1898
- ISSN
- 0278-0062 (ISSN-L)
- 1558-254X
- OpenAlex
- W2912564039
- Cited by
- 144
- References
- 6
- Citations by year
- 2026: 4 · 2025: 30 · 2024: 18 · 2023: 24 · 2022: 23 · 2021: 26 · 2020: 16 · 2019: 3
- FWCI
- 7.61
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- IEEE Transactions on Medical Imaging (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Natural Science Foundation of China (61601012)
- National Key R&D Program of China (2017YFC0113100)
- Topics
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Medical Image Segmentation Techniques
- Physical Sciences › Engineering › Biomedical Engineering › Medical Imaging and Analysis
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Advanced Neural Network Applications
- Keywords
- organ localization, CT images, high-resolution feature maps, anatomical structure detection, organ registration
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