The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
obitools: a unix‐inspired software package for DNA metabarcoding
Abstract
DNA metabarcoding offers new perspectives in biodiversity research. This recently developed approach to ecosystem study relies heavily on the use of next‐generation sequencing (NGS) and thus calls upon the ability to deal with huge sequence data sets. The obitools package satisfies this requirement thanks to a set of programs specifically designed for analysing NGS data in a DNA metabarcoding context. Their capacity to filter and edit sequences while taking into account taxonomic annotation helps to set up tailor‐made analysis pipelines for a broad range of DNA metabarcoding applications, including biodiversity surveys or diet analyses. The obitools package is distributed as an open source software available on the following website: http://metabarcoding.org/obitools. A Galaxy wrapper is available on the GenOuest core facility toolshed: http://toolshed.genouest.org.
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Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
Needleman, S. B., & Wunsch, C. D. (1970) · Journal of Molecular Biology · doi:10.1016/0022-2836(70)90057-4 · Cited by 11,288
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Schloss, P. D., Gevers, D., & Westcott, S. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027310 · Cited by 2,112
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A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions
Wallace, R. J., Sasson, G., Garnsworthy, P. C., Tapio, I., Gregson, E., Bani, P., Huhtanen, P., Bayat, A. R., Strozzi, F., Biscarini, F., et al. (2019) · Science Advances · doi:10.1126/sciadv.aav8391 · Cited by 410
Self-citationOral Samples as non-invasive proxies for assessing the composition of the rumen microbial community
Tapio, I., Shingfield, K. J., McKain, N., Bonin, A., Fischer, D., Bayat, A. R., Vilkki, J., Taberlet, P., Snelling, T. J., & Wallace, R. J. (2016) · PLoS ONE · doi:10.1371/journal.pone.0151220 · Cited by 125
Self-citationRapid range shifts and megafaunal extinctions associated with late Pleistocene climate change
Seersholm, F. V., Werndly, D. J., Grealy, A., Johnson, T., Keenan Early, E. M., Lundelius, E. L., Winsborough, B., Farr, G. E., Toomey, R., Hansen, A. J., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-16502-3 · Cited by 92
Multiple dimensions of dietary diversity in large mammalian herbivores
Kartzinel, T. R., & Pringle, R. M. (2020) · Journal of Animal Ecology · doi:10.1111/1365-2656.13206 · Cited by 63
Metadata
- Authors
- Boyer, F., Mercier, C., Bonin, A., Le Bras, Y., Taberlet, P., & Coissac, E.
- Venue
- Molecular Ecology Resources
- Publisher
- Wiley
- Published
- 2015-05-26
- Volume
- 16
- Issue
- 1
- Pages
- 176-182
- ISSN
- 1755-098X (ISSN-L)
- 1755-0998
- OpenAlex
- W2098035523
- Cited by
- 1,133
- References
- 3
- FWCI
- 39.92
- Type
- journal article
- Language
- en
- Open access
- closed
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