The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
The fourth‐corner solution – using predictive models to understand how species traits interact with the environment
Abstract
Summary: An important problem encountered by ecologists in species distribution modelling (SDM) and in multivariate analysis is that of understanding why environmental responses differ across species, and how differences are mediated by functional traits. We describe a simple, generic approach to this problem – the core idea being to fit a predictive model for species abundance (or presence/absence) as a function of environmental variables, species traits and their interaction. We show that this method can be understood as a model‐based approach to the fourth‐corner problem – the problem of studying the environment–trait association using matrices of abundance or presence/absence data across species, environmental data across sites and trait data across species. The matrix of environment–trait interaction coefficients is the fourth corner. We illustrate that compared with existing approaches to the fourth‐corner problem, the proposed model‐based approach has advantages in interpretability and its capacity to perform model selection and make predictions. To illustrate the method we used a generalized linear model with a LASSO penalty, fitted to data sets from four different studies requiring different models, illustrating the flexibility of the proposed approach. Predictive performance of the model is compared with that of fitting SDM s separately to each species, and in each case, it is shown that the trait model, despite being much simpler, had comparable predictive performance, even significantly outperforming separate SDM s in some cases.
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Cites
Model selection and multimodel inference: a practical information-theoretic approach.
Guthery, F. S., Burnham, K. P., & Anderson, D. R. (2003) · The Journal of Wildlife Management · doi:10.2307/3802723 · Cited by 41,495
The Elements of Statistical Learning
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Cited by
So Many Variables: Joint Modeling in Community Ecology
Warton, D. I., Blanchet, F. G., O’Hara, R. B., Ovaskainen, O., Taskinen, S., Walker, S. C., & Hui, F. K. C. (2015) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2015.09.007 · Cited by 854
Self-citationNorberg, A., Abrego, N., Blanchet, F. G., Adler, F. R., Anderson, B. J., Anttila, J., Araújo, M. B., Dallas, T., Dunson, D., Elith, J., et al. (2019) · Ecological Monographs · doi:10.1002/ecm.1370 · Cited by 573
Self-citationHandbook of protocols for standardized measurement of terrestrial invertebrate functional traits
Moretti, M., Dias, A. T. C., de Bello, F., Altermatt, F., Chown, S. L., Azcárate, F. M., Bell, J. R., Fournier, B., Hedde, M., Hortal, J., et al. (2017) · Functional Ecology · doi:10.1111/1365-2435.12776 · Cited by 447
Joint Species Distribution Modelling: With Applications in R
Ovaskainen, O., & Abrego, N. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108591720 · Cited by 394
Community assembly, functional traits, and phylogeny in Himalayan river birds
Sinha, A., Chatterjee, N., Krishnamurthy, R., & Ormerod, S. J. (2022) · Ecology and Evolution · doi:10.1002/ece3.9012 · Cited by 21
“The L- species table was analyzed using correspondence analysis (CA), while the R- environmental variables table and Q- trait table were analyzed by a Hill– Smith PCA combining quantitative and qualitative variables using CA species scores as a column weight to couple Q and L (Brown et al., 2014).”
Method
Metadata
- Authors
- Brown, A. M., Warton, D. I., Andrew, N. R., Binns, M., Cassis, G., & Gibb, H.
- Venue
- Methods in Ecology and Evolution
- Publisher
- Wiley
- Published
- 2014-04
- Volume
- 5
- Issue
- 4
- Pages
- 344-352
- ISSN
- 2041-210X (ISSN-L)
- OpenAlex
- W2108144899
- Cited by
- 327
- References
- 3
- FWCI
- 10.43
- Type
- journal article
- Language
- en
- Open access
- closed
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- Brown, A. M., Warton, D. I., Andrew, N. R., Binns, M., Cassis, G., & Gibb, H. (2014). The fourth‐corner solution – using predictive models to understand how species traits interact with the environment. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210x.12163
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