The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Stacking species distribution models and adjusting bias by linking them to macroecological models
Abstract
Aim: Species distribution models (SDM s) are common tools in biogeography and conservation ecology. It has been repeatedly claimed that aggregated (stacked) SDM s (S‐SDM s) will overestimate species richness. One recently suggested solution to this problem is to use macroecological models of species richness to constrain S‐SDM s. Here, we examine current practice in the development of S‐SDM s to identify methodological problems, provide tools to overcome these issues, and quantify the performance of correctly stacked S‐SDM s alongside macroecological models. Locations: B arents S ea, E urope and Dutch W adden S ea. Methods: We present formal mathematical arguments demonstrating how S‐SDM s should and should not be stacked. We then compare the performance of macroecological models and correctly stacked S‐SDM s on the same data to determine if the former can be used to constrain the latter. Next, we develop a maximum‐likelihood approach to adjusting S‐SDM s and discuss how it could potentially be used in combination with macroecological models. Finally, we use this tool to quantify how S‐SDM s deviate from observed richness in four very different case studies. Results: We demonstrate that stacking methods based on thresholding site‐level occurrence probabilities will almost always be biased, and that these biases will tend toward systematic overprediction of richness. Next, we show that correctly stacked S‐SDMs perform very similarly to macroecological models in that they both have a tendency to overpredict richness in species‐poor sites and underpredict it in species‐rich sites. Main conclusions: Our results suggest that the perception that S‐SDM s consistently overpredict richness is driven largely by incorrect stacking methods. With these biases removed, S‐SDM s perform similarly to macroecological models, suggesting that combining the two model classes will not offer much improvement. However, if situations where coupling S‐SDM s and macroecological models would be beneficial are subsequently identified, the tools we develop would facilitate such a synthesis.
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Citations
Cites
A review of methods for the assessment of prediction errors in conservation presence/absence models
FIELDING, A. H., & BELL, J. F. (1997) · Environmental Conservation · doi:10.1017/s0376892997000088 · Cited by 6,956
MACMAHON, S. (1990) · The Lancet · doi:10.1016/0140-6736(90)90878-9 · Cited by 4,253 · cited 1×
“The observed bias in S-SDMs may have nothing to do with SDM model accuracy or neglecting species interactions during stacking, but may instead be caused by ‘regression dilution’ or ‘attenuation’ (Madansky, 1959; MacMahon et al., 1990; McInerny & Purves, 2011).”
BackgroundThe art of modelling range-shifting species: The art of modelling range-shifting species
Elith, J., Kearney, M., & Phillips, S. (2010) · Methods in Ecology and Evolution · doi:10.1111/j.2041-210x.2010.00036.x · Cited by 2,813
Selecting thresholds of occurrence in the prediction of species distributions
Liu, C., Berry, P. M., Dawson, T. P., & Pearson, R. G. (2005) · Ecography · doi:10.1111/j.0906-7590.2005.03957.x · Cited by 2,701
Regression models for spatial prediction: their role for biodiversity and conservation
Lehmann, A., Overton, J. M., & Austin, M. P. (2002) · Biodiversity & Conservation · doi:10.1023/a:1021354914494 · Cited by 111
Cited by
Is my species distribution model fit for purpose? Matching data and models to applications
Guillera‐Arroita, G., Lahoz‐Monfort, J. J., Elith, J., Gordon, A., Kujala, H., Lentini, P. E., McCarthy, M. A., Tingley, R., & Wintle, B. A. (2015) · Global Ecology and Biogeography · doi:10.1111/geb.12268 · Cited by 961
Valavi, R., Guillera‐Arroita, G., Lahoz‐Monfort, J. J., & Elith, J. (2022) · Ecological Monographs · doi:10.1002/ecm.1486 · Cited by 830
Kaky, E., Nolan, V., Alatawi, A., & Gilbert, F. (2020) · Ecological Informatics · doi:10.1016/j.ecoinf.2020.101150 · Cited by 432
Joint Species Distribution Modelling: With Applications in R
Ovaskainen, O., & Abrego, N. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108591720 · Cited by 394
Clark, J. S., Nemergut, D., Seyednasrollah, B., Turner, P. J., & Zhang, S. (2017) · Ecological Monographs · doi:10.1002/ecm.1241 · Cited by 283
Metadata
- Authors
- Calabrese, J. M., Certain, G., Kraan, C., & Dormann, C. F.
- Venue
- Global Ecology and Biogeography
- Publisher
- Wiley
- Published
- 2013-08-11
- Volume
- 23
- Issue
- 1
- Pages
- 99-112
- ISSN
- 1466-822X (ISSN-L)
- 1466-8238
- OpenAlex
- W1848926566
- Cited by
- 362
- References
- 5
- FWCI
- 10.47
- Type
- journal article
- Language
- en
- Open access
- closed
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- Calabrese, J. M., Certain, G., Kraan, C., & Dormann, C. F. (2014). Stacking species distribution models and adjusting bias by linking them to macroecological models. Global Ecology and Biogeography. https://doi.org/10.1111/geb.12102
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.