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msatcommander: detection of microsatellite repeat arrays and automated, locus‐specific primer design
Abstract
msatcommander is a platform‐independent program designed to search for microsatellite arrays, design primers, and tag primers using an automated routine. msatcommander accepts as input DNA sequence data in single‐sequence or concatenated, fasta‐formatted files. Search data and locus‐specific primers are written to comma‐separated value files for subsequent use in spreadsheet or database programs. Binary versions of the graphical interface for msatcommander are available for Apple OS X and Windows XP. Users of other operating systems may run the graphical interface version using the available source code, provided their environment supports at least Python 2.4, Biopython 1.43, and wxPython 2.8. msatcommander is available from http://code.google.com/p/msatcommander/.
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Cited by
Applications of next generation sequencing in molecular ecology of non-model organisms
Ekblom, R., & Galindo, J. (2011) · Heredity · doi:10.1038/hdy.2010.152 · Cited by 1,074
Current trends in microsatellite genotyping
GUICHOUX, E., LAGACHE, L., WAGNER, S., CHAUMEIL, P., LÉGER, P., LEPAIS, O., LEPOITTEVIN, C., MALAUSA, T., REVARDEL, E., SALIN, F., et al. (2011) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2011.03014.x · Cited by 937
Glenn, T. C., Nilsen, R. A., Kieran, T. J., Sanders, J. G., Bayona-Vásquez, N. J., Finger, J. W., Pierson, T. W., Bentley, K. E., Hoffberg, S. L., Louha, S., et al. (2019) · PeerJ · doi:10.7717/peerj.7755 · Cited by 425
Self-citationFast, Cost-Effective Development of Species-Specific Microsatellite Markers by Genomic Sequencing
Abdelkrim, J., Robertson, B. C., Stanton, J.-A. L., & Gemmell, N. J. (2009) · BioTechniques · doi:10.2144/000113084 · Cited by 375
GARDNER, M. G., FITCH, A. J., BERTOZZI, T., & LOWE, A. J. (2011) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2011.03037.x · Cited by 287
Metadata
- Authors
- FAIRCLOTH, B. C.
- Venue
- Molecular Ecology Resources
- Publisher
- Wiley
- Published
- 2008-01
- Volume
- 8
- Issue
- 1
- Pages
- 92-94
- ISSN
- 1755-098X (ISSN-L)
- 1755-0998
- OpenAlex
- W2144924760
- Cited by
- 923
- References
- 0
- FWCI
- 14.23
- Type
- journal article
- Language
- en
- Open access
- closed
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- FAIRCLOTH, B. C. (2008). msatcommander: detection of microsatellite repeat arrays and automated, locus‐specific primer design. Molecular Ecology Resources. https://doi.org/10.1111/j.1471-8286.2007.01884.x
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