Tubulin and GTP Are Crucial Elements for Postsynaptic Density Construction and Aggregation
Open accessAbstract
In our previous experiments on the postsynaptic density lattice (PSDL), which is thought to serve as the backbone structure for the PSD, we suggested that tubulin plays a fundamental role in the PSD structure at excitatory synapses. In this study, we further reveal an unrecognized characteristic of tubulin within the PSD. First, using electron microscopy, we identified an interaction between postsynaptic structures (PSDL and PSD) and polymerizing microtubules, which led to the binding of polymerizing microtubules to PSDL and PSD. In turn, this interaction induced changes in the microtubule morphology. These results support earlier findings suggesting that microtubules transiently intruding into the spine head can associate with PSDs, inducing structural changes in the PSD. Next, we observed that the structural integrity of both PSD and PSDL was compromised upon exposure to GTP and microtubule‐affecting reagents. These findings reinforce the idea that tubulin is a crucial building block of the PSD architecture. Moreover, we found that PSD aggregation was enhanced following interactions with polymerizing tubulin and was disintegrated upon treatment with GTP and microtubule‐affecting reagents. These results indicate that microtubules also play a key role in PSD aggregation in vitro. Collectively, our study highlights the involvement of tubulin in the construction, function (specifically its interaction with polymerizing microtubules), and aggregation of the PSD, which may impact both physiological and pathological conditions. Furthermore, our in vitro findings suggest that GTP can either destroy or induce the enlargement and reorganization of PSD structures, depending on its interaction with growing microtubules. image
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
These findings support a view of the PSD as an inherently dynamic structure that balances disassembly and reconstruction, with the tubulin-microtubule system and GTP availability acting as modulators of PSD maintenance and reorganization.
“Together, these findings support a view of the PSD as an inherently dynamic structure that balances disassembly and reconstruction, with the tubulin-microtubule system and GTP availability acting as modulators of PSD maintenance and reorganization [38].”
From Molecular Physiology of the Neuronal Synapse (2026) · cites this paper as [38]
Recent in vitro work suggests that the PSD may be dynamically maintained by interactions between a tubulin-containing PSD lattice/backbone and polymerizing microtubules.
“Recent in vitro work suggests that the PSD may be dynamically maintained not only by canonical scaffold assemblies, but also by interactions between a tubulin-containing PSD lattice/backbone and polymerizing microtubules.”
From Molecular Physiology of the Neuronal Synapse (2026) · cites this paper as [38]
Suzuki et al. reported physical associations between postsynaptic structures and growing microtubules, and found that exposing PSD/PSD-lattice preparations to GTP and microtubule-affecting reagents compromises PSD structural integrity, with GTP driving disassembly in the absence of polymerizing tubulin and enlargement/reorganization when polymerizing microtubules are available.
“Using electron microscopy, Suzuki et al. reported physical associations between postsynaptic structures and growing microtubules, consistent with a model in which transient microtubule intrusions into spine heads can couple to PSD structural remodeling. Notably, the authors found that exposing PSD/PSD-lattice preparations to GTP and microtubule-affecting reagents compromises PSD structural”
From Molecular Physiology of the Neuronal Synapse (2026) · cites this paper as [38]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Structural and Molecular Remodeling of Dendritic Spine Substructures during Long-Term Potentiation
Bosch, M., Castro, J., Saneyoshi, T., Matsuno, H., Sur, M., & Hayashi, Y. (2014) · Neuron · doi:10.1016/j.neuron.2014.03.021 · Cited by 637 · see citing works
Dendritic Tau in Alzheimer’s Disease
Ittner, A., & Ittner, L. M. (2018) · Neuron · doi:10.1016/j.neuron.2018.06.003 · Cited by 278 · see citing works
Frandemiche, M. L., De Seranno, S., Rush, T., Borel, E., Elie, A., Arnal, I., Lanté, F., & Buisson, A. (2014) · The Journal of Neuroscience · doi:10.1523/jneurosci.4261-13.2014 · Cited by 272 · see citing works
Flagged first, then by citations
Research works printed but not linked: 46
- Akhmanova, A., and M. O. Steinmetz. 2008. “ Tracking the Ends: A Dynamic Protein Network Controls the Fate of Microtubule Tips.” Nature Reviews. Molecular Cell Biology 9: 309– 322. 18322465
- Blomberg, F., R. S. Cohen, and P. Siekevitz. 1977. “ The Structure of Postsynaptic Densities Isolated From Dog Cerebral Cortex. II. Characterization and Arrangement of Some of the Major Proteins Within the Structure.” Journal of Cell Biology 74: 204– 225. 406264 PMC2109869
- Carlin, R. K., D. J. Grab, and P. Siekevitz. 1982. “ Postmortem Accumulation of Tubulin in Postsynaptic Density Preparations.” Journal of Neurochemistry 38: 94– 100. 7108538
- Chrétien, D., S. D. Fuller, and E. Karsenti. 1995. “ Structure of Growing Microtubule Ends: Two‐Dimensional Sheets Close Into Tubes at Variable Rates.” Journal of Cell Biology 129: 1311– 1328. 7775577 PMC2120473
- Cohen, R. S., F. Blomberg, K. Berzins, and P. Siekevitz. 1977. “ The Structure of Postsynaptic Densities Isolated From Dog Cerebral Cortex. I. Overall Morphology and Protein Composition.” Journal of Cell Biology 74: 181– 203. 194906 PMC2109867
- Farley, M. M., M. T. Swulius, and M. N. Waxham. 2015. “ Electron Tomographic Structure and Protein Composition of Isolated Rat Cerebellar, Hippocampal and Cortical Postsynaptic Densities.” Neuroscience 304: 286– 301. 26215919 PMC4547907
- Gray, E. G., L. E. Westrum, R. D. Burgoyne, and J. Barron. 1982. “ Synaptic Organisation and Neuron Microtubule Distribution.” Cell and Tissue Research 226: 579– 588. 7139692
- Gu, J., B. L. Firestein, and J. Q. Zheng. 2008. “ Microtubules in Dendritic Spine Development.” Journal of Neuroscience 28: 12120– 12124. 19005076 PMC2605155
- Gudimchuk, N. B., and J. R. McIntosh. 2021. “ Regulation of Microtubule Dynamics, Mechanics and Function Through the Growing Tip.” Nature Reviews. Molecular Cell Biology 22: 777– 795. 34408299
- Hu, X., L. Ballo, L. Pietila, et al. 2011. “ BDNF‐Induced Increase of PSD‐95 in Dendritic Spines Requires Dynamic Microtubule Invasions.” Journal of Neuroscience 31: 15597– 15603. 22031905 PMC3224154
- Hu, X., C. Viesselmann, S. Nam, E. Merriam, and E. W. Dent. 2008. “ Activity‐Dependent Dynamic Microtubule Invasion of Dendritic Spines.” Journal of Neuroscience 28: 13094– 13105. 19052200 PMC6671621
- Ittner, L. M., Y. D. Ke, F. Delerue, et al. 2010. “ Dendritic Function of Tau Mediates Amyloid‐Beta Toxicity in Alzheimer's Disease Mouse Models.” Cell 142: 387– 397. 20655099
- Jan, H. H., I. T. Chen, Y. Y. Tsai, and Y. C. Chang. 2002. “ Structural Role of Zinc Ions Bound to Postsynaptic Densities.” Journal of Neurochemistry 83: 525– 534. 12390514
- Jaworski, J., L. C. Kapitein, S. M. Gouveia, et al. 2009. “ Dynamic Microtubules Regulate Dendritic Spine Morphology and Synaptic Plasticity.” Neuron 61: 85– 100. 19146815
- Jung, J. H., X. Chen, and T. S. Reese. 2023. “ Cryo‐EM Tomography and Automatic Segmentation Delineate Modular Structures in the Postsynaptic Density.” Frontiers in Synaptic Neuroscience 15: 1123564. 37091879 PMC10117989
- Lai, S. L., S. F. Chiang, I. T. Chen, W. Y. Chow, and Y. C. Chang. 1999. “ Interprotein Disulfide Bonds Formed During Isolation Process Tighten the Structure of the Postsynaptic Density.” Journal of Neurochemistry 73: 2130– 2138. 10537073
- Liu, Q., W.‐D. Yao, and T. Suzuki. 2013. “ Specific Interaction of Postsynaptic Densities With Membrane Rafts Isolated From Synaptic Plasma Membranes.” Journal of Neurogenetics 27, no. 1–2: 43– 58. 10.3109/01677063.2013.772175. 23527882 · DOI
- Lo, L. P., S. H. Liu, and Y. C. Chang. 2007. “ Assembling Microtubules Disintegrate the Postsynaptic Density In Vitro.” Cell Motility and the Cytoskeleton 64: 6– 18. 16986141
- Lüders, J., and T. Stearns. 2007. “ Microtubule‐Organizing Centres: A Re‐Evaluation.” Nature Reviews, Molecular Cell Biology 8: 161– 167. 17245416
- Mandelkow, E. M., E. Mandelkow, and R. A. Milligan. 1991. “ Microtubule Dynamics and Microtubule Caps: A Time‐Resolved Cryo‐Electron Microscopy Study.” Journal of Cell Biology 114: 977– 991. 1874792 PMC2289108
- Merriam, E. B., M. Millette, D. C. Lumbard, et al. 2013. “ Synaptic Regulation of Microtubule Dynamics in Dendritic Spines by Calcium, F‐Actin, and Drebrin.” Journal of Neuroscience 33: 16471– 16482. 24133252 PMC3797370
- Pena‐Ortega, F., A. A. Robles‐Gomez, and L. Xolalpa‐Cueva. 2022. “ Microtubules as Regulators of Neural Network Shape and Function: Focus on Excitability, Plasticity and Memory.” Cells 11: 1– 27. PMC8946818 35326374
- Penazzi, L., C. Tackenberg, A. Ghori, et al. 2016. “ Abeta‐Mediated Spine Changes in the Hippocampus Are Microtubule‐Dependent and Can Be Reversed by a Subnanomolar Concentration of the Microtubule‐Stabilizing Agent Epothilone D.” Neuropharmacology 105: 84– 95. 26772969 PMC4873443
- Petersen, J. D., X. Chen, L. Vinade, A. Dosemeci, J. E. Lisman, and T. S. Reese. 2003. “ Distribution of Postsynaptic Density (PSD)‐95 and Ca2+/Calmodulin‐Dependent Protein Kinase II at the PSD.” Journal of Neuroscience 23: 11270– 11278. 14657186 PMC6741048
- Ratner, N., and H. R. Mahler. 1983. “ Structural Organization of Filamentous Proteins in Postsynaptic Density.” Biochemistry 22: 2446– 2453. 6860641
- Samson, A. L., A. S. Knaupp, M. Sashindranath, et al. 2012. “ Nucleocytoplasmic Coagulation: An Injury‐Induced Aggregation Event That Disulfide Crosslinks Proteins and Facilitates Their Removal by Plasmin.” Cell Reports 2: 889– 901. 23041318
- Sanchez, A. D., and J. L. Feldman. 2017. “ Microtubule‐Organizing Centers: From the Centrosome to Non‐Centrosomal Sites.” Current Opinion in Cell Biology 44: 93– 101. 27666167 PMC5362366
- Schätzle, P., M. E. da Silva, R. P. Tas, et al. 2018. “ Activity‐Dependent Actin Remodeling at the Base of Dendritic Spines Promotes Microtubule Entry.” Current Biology 28: 2081– 2093.e2086. 29910073
- Schneider, C. A., W. S. Rasband, and K. W. Eliceiri. 2012. “ NIH Image to ImageJ: 25 Years of Image Analysis.” Nature Methods 9: 671– 675. 22930834 PMC5554542
- Sekino, Y., N. Kojima, and T. Shirao. 2007. “ Role of Actin Cytoskeleton in Dendritic Spine Morphogenesis.” Neurochemistry International 51: 92– 104. 17590478
- Somerville, R. A., P. A. Merz, and R. I. Carp. 1984. “ The Effects of Detergents on the Composition of Postsynaptic Densities.” Journal of Neurochemistry 43: 184– 191. 6202843
- Spence, E. F., and S. H. Soderling. 2015. “ Actin out: Regulation of the Synaptic Cytoskeleton.” Journal of Biological Chemistry 290: 28613– 28622. 26453304 PMC4661376
- Sui, C. W., W. Y. Chow, and Y. C. Chang. 2000. “ Effects of Disulfide Bonds Formed During Isolation Process on the Structure of the Postsynaptic Density.” Brain Research 873: 268– 273. 10930553
- Sumita, K., Y. H. Lo, K. Takeuchi, et al. 2016. “ The Lipid Kinase PI5P4Kβ Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis.” Molecular Cell 61: 187– 198. 26774281 PMC4747657
- Sun, Y., M. Smirnov, N. Kamasawa, and R. Yasuda. 2021. “ Rapid Ultrastructural Changes in the PSD and Surrounding Membrane After Induction of Structural LTP in Single Dendritic Spines.” Journal of Neuroscience 41: 7003– 7014. 34266899 PMC8372018
- Suzuki, T., K. Kametani, W. Guo, and W. Li. 2018. “ Protein Components of Post‐Synaptic Density Lattice, a Backbone Structure for Type I Excitatory Synapses.” Journal of Neurochemistry 144: 390– 407. 29134655
- Suzuki, T., Y. Shirai, and W. Li. 2019. “ Isolation of Synapse Sub‐Domains by Subcellular Fractionation Using Sucrose Density Gradient Centrifugation: Purification of the Synaptosome, Synaptic Plasma Membrane, Postsynaptic Density, Synaptic Membrane Raft, and Postsynaptic Density Lattice.” In Neuroproteomics. Neuromethods, edited by K. Li, vol. 146. Humana Press 21‐42.
- Suzuki, T., N. Terada, S. Higashiyama, et al. 2021. “ Non‐Microtubule Tubulin‐Based Backbone and Subordinate Components of Postsynaptic Density Lattices.” Life Science Alliance 4: e202000945. 34006534 PMC8326785
- Swulius, M. T., Y. Kubota, A. Forest, and M. N. Waxham. 2010. “ Structure and Composition of the Postsynaptic Density During Development.” Journal of Comparative Neurology 518: 4243– 4260. 20878786 PMC2948241
- Traut, T. W. 1994. “ Physiological Concentrations of Purines and Pyrimidines.” Molecular and Cellular Biochemistry 140: 1– 22. 7877593
- Verstraelen, P., J. R. Detrez, M. Verschuuren, et al. 2017. “ Dysregulation of Microtubule Stability Impairs Morphofunctional Connectivity in Primary Neuronal Networks.” Frontiers in Cellular Neuroscience 11: 173. 28690500 PMC5480095
- Wade, R. H. 2009. “ On and Around Microtubules: An Overview.” Molecular Biotechnology 43: 177– 191. 19565362
- Westrum, L. E., and E. G. Gray. 1976. “ Microtubules and Membrane Specializations.” Brain Research 105: 547– 550. 1260462
- Westrum, L. E., and E. G. Gray. 1977. “ Microtubules Associated With Postsynaptic thickenings.” Journal of Neurocytology 6: 505– 518. 303692
- Westrum, L. E., D. H. Jones, E. G. Gray, and J. Barron. 1980. “ Microtubules, Dendritic Spines and Spine Appratuses.” Cell and Tissue Research 208: 171– 181. 6996822
- Wu, X., Y. Zhou, Z. Huang, et al. 2020. “ The Study of Microtubule Dynamics and Stability at the Postsynaptic Density in a Rat Pilocarpine Model of Temporal Lobe Epilepsy.” Annals of Translational Medicine 8: 863. 32793707 PMC7396801
Cited by
Sorted by citations
Molecular Physiology of the Neuronal Synapse
Ramírez-Expósito, M. J., Cueto-Ureña, C., & Martínez-Martos, J. M. (2026) · Current Issues in Molecular Biology · doi:10.3390/cimb48010088 · Cited by 6 · see citing works
“Together, these findings support a view of the PSD as an inherently dynamic structure that balances disassembly and reconstruction, with the tubulin-microtubule system and GTP availability acting as modulators of PSD maintenance and reorganization [38].”
HDAC6 Inhibition Drives Synaptic Protein Acetylation and Enhances Long-Term Memory in Mice
Rivas, S. P., Esquivel, L., Busso, J., Salles, A., Krawczyk, M., Alvarez, M. S., Acutain, M. F., Báez, M. V., Boccia, M. M., & Freudenthal, R. (2025) · Molecular Neurobiology · doi:10.1007/s12035-025-05385-4 · Cited by 2 · see citing works
“At excitatory synapses, tubulin has been proposed to contribute to the structural organization of the postsynaptic density during synaptic plasticity [31].”
- Authors
- Suzuki, T., Fujii, T., Kametani, K., Li, W., & Tabuchi, K.
- Affiliations
- Shinshu University (JP)
- Rakuno Gakuen University (JP)
- Shanghai Jiao Tong University (CN)
- Corresponding author
- Suzuki, Tatsuo
- Venue
- Journal of Neurochemistry
- Publisher
- Wiley
- Published
- 2025-05
- Volume
- 169
- Issue
- 5
- Pages
- e70085-e70085
- ISSN
- 0022-3042 (ISSN-L)
- 1471-4159
- PMC
- PMC12093452
- OpenAlex
- W4410547827
- Cited by
- 2
- References
- 49
- Citations by year
- 2026: 1 · 2025: 1
- FWCI
- 0.78
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Neurochemistry (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Japan Society for the Promotion of Science (JP22K06428)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Keywords
- postsynaptic density, tubulin, GTP, microtubules, excitatory synapses, dendritic spines, microtubule assembly, synaptic structure
- MeSH terms
- Animals, Cells, Cultured, Guanosine Triphosphate, Hippocampus, Microtubules, Tubulin, Rats, Post-Synaptic Density
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review