Macroevolution in silico: scales, constraints and universals
Abstract
Large‐scale evolution involves several layers of complexity spanning multiple scales, from genes and organisms to whole ecosystems. In this article, we review several models involving the macroevolution of artificial organisms, communities or ecosystems, highlighting their importance and potential role in expanding the Modern Synthesis. Afterwards, we summarize the key results obtained from our model of artificially evolved ecosystems where individuals are defined as embodied entities within a physical, simulated world where they can evolve different traits and exploit multiple resources. Starting from an initial state where single cells with identical genotypes are present, the system evolves towards complex communities where the feedbacks between population expansion, evolved cell adhesion and the structure of the environment lead to a major innovation resulting from the emergence of ecosystem engineering. The tempo and mode of this process illustrates the relevance in considering a physical embedding as part of the model description and the feedbacks between different scales within the evolutionary hierarchy. The future steps in modelling macroevolution by means of in silico models and how they might contribute to the Modern Synthesis are outlined.
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Other simulations of evolving ecosystems confirm the generative potential of artificial life systems.
“Other simulations of evolving ecosystems confirm the generative potential of artificial life systems [300,314–317].”
From Fundamental constraints to the logic of living systems (2024) · cites this paper as [317]
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Erwin, D. H., Laflamme, M., Tweedt, S. M., Sperling, E. A., Pisani, D., & Peterson, K. J. (2011) · Science · doi:10.1126/science.1206375 · Cited by 1,336 · see citing works
Explaining the Cambrian "Explosion" of Animals
Marshall, C. R. (2006) · Annual Review of Earth and Planetary Sciences · doi:10.1146/annurev.earth.33.031504.103001 · Cited by 506 · see citing works
Towards a new evolutionary synthesis
Carroll, R. L. (2000) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(99)01743-7 · Cited by 133 · see citing works
Extinction cascades and catastrophe in ancient food webs
Roopnarine, P. D. (2006) · Paleobiology · doi:10.1666/05008.1 · Cited by 109 · see citing works
Numerical testing of evolution theories: Part I Theoretical introduction and basic tests
Barricelli, N. A. (1962) · Acta Biotheoretica · doi:10.1007/bf01556771 · Cited by 107 · see citing works
Evolution, complexity, entropy and artificial reality
Ray, T. S. (1994) · Physica D: Nonlinear Phenomena · doi:10.1016/0167-2789(94)90286-0 · Cited by 93 · see citing works
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Fundamental constraints to the logic of living systems
Solé, R., Kempes, C. P., Corominas-Murtra, B., De Domenico, M., Kolchinsky, A., Lachmann, M., Libby, E., Saavedra, S., Smith, E., & Wolpert, D. (2024) · Interface Focus · doi:10.1098/rsfs.2024.0010 · Cited by 34 · see citing works
Self-citationThe road to synthetic multicellularity
Solé, R., Ollé-Vila, A., Vidiella, B., Duran-Nebreda, S., & Conde-Pueyo, N. (2018) · Current Opinion in Systems Biology · doi:10.1016/j.coisb.2017.11.007 · Cited by 19 · see citing works
Self-citation
- Authors
- Solé, R. V., & Valverde, S.
- Affiliations
- Institució Catalana de Recerca i Estudis Avançats (ES)
- Corresponding author
- Solé, Ricard V.
- Venue
- Palaeontology
- Publisher
- Wiley
- Published
- 2013-10-08
- Volume
- 56
- Issue
- 6
- Pages
- 1327-1340
- ISSN
- 0031-0239 (ISSN-L)
- 1475-4983
- OpenAlex
- W1983437213
- Cited by
- 8
- References
- 6
- Citations by year
- 2026: 1 · 2024: 1 · 2018: 2 · 2016: 2 · 2014: 1 · 2013: 1
- FWCI
- 0.88
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Palaeontology (publishedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Social Sciences › Arts and Humanities › History and Philosophy of Science › Philosophy and History of Science
- Keywords
- macroevolution, artificial organisms, artificial ecosystems, embodied evolution, ecosystem engineering, cell adhesion, evolutionary innovation, Modern Synthesis, evolutionary hierarchy
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