Microbial dynamics and natural remediation patterns of F usarium ‐infested watermelon soil under 3‐yr of continuous fallow condition

Abstract

Abstract Long‐term monoculture of watermelon results in inhibited growth and decreased crop yields, possibly because of imbalance in microbial ecology caused by accumulation of the pathogen in soil. This results in serious problems in the economics of watermelon production. We investigated the build‐up of F usarium in soil under watermelon cultivation and changes over 3 yr of fallow in a microcosm. We focused on changes in the microbial community of F usarium‐infected soil, including the diversity of the microfloral species composition, and species abundance. Long‐term monoculture of watermelon leads to changes in microbial diversity and community structure. The microbes most readily cultured from infested soil were suppressed by watermelon wilt pathogen F usarium oxysporum f. sp. niveum ( FON ). Of 52 isolated and identified culturable microbes, 83.3% of bacteria, 85.7% of actinomycetes, 31.6% of fungi and 20.0% of Fusarium sp. were inhibited by FON on bioassay plates. Prior to fallowing, infested soil was a transformed ‘fungus‐type’ soil. After 3 yr of fallow, the infested soil had remediated naturally, and soil microbial diversity recovered considerably. Abundance of dominant bacterial populations was increased by 118–177%, actinomycetes, fungi and FON were decreased by 23–32, 33–37 and 50%, respectively. The ratio of bacteria: actnomycetes: fungus: F usarium sp. in infested soil changed from 24 000:100:4:1 prior to fallow to 57 000:100:3.5:1 after fallowing, nearer to the 560 000:400:8:1 ratio of healthy soil not used for watermelon cultivation. This suggests the ‘fungus‐type’ soil was converting to ‘bacteria‐type’ soil and that disrupted microbial communities in infested soil were restored during fallow.